Strain Fitness in Pseudomonas simiae WCS417 around PS417_21270

Experiment: 80% Methanol 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_21260 and PS417_21265 are separated by 41 nucleotidesPS417_21265 and PS417_21270 are separated by 162 nucleotidesPS417_21270 and PS417_21275 are separated by 104 nucleotides PS417_21260: PS417_21260 - hypothetical protein, at 4,622,357 to 4,622,962 _21260 PS417_21265: PS417_21265 - hypothetical protein, at 4,623,004 to 4,623,258 _21265 PS417_21270: PS417_21270 - translation initiation factor 2, at 4,623,421 to 4,623,906 _21270 PS417_21275: PS417_21275 - GntR family transcriptional regulator, at 4,624,011 to 4,625,450 _21275 Position (kb) 4623 4624Strain fitness (log2 ratio) -2 -1 0 1 2at 4622.470 kb on - strandat 4622.537 kb on + strandat 4622.537 kb on + strand, within PS417_21260at 4622.537 kb on + strand, within PS417_21260at 4622.538 kb on - strand, within PS417_21260at 4622.538 kb on - strand, within PS417_21260at 4622.538 kb on - strand, within PS417_21260at 4622.538 kb on - strand, within PS417_21260at 4622.541 kb on + strand, within PS417_21260at 4622.541 kb on + strand, within PS417_21260at 4622.541 kb on + strand, within PS417_21260at 4622.541 kb on + strand, within PS417_21260at 4622.562 kb on + strand, within PS417_21260at 4622.563 kb on - strand, within PS417_21260at 4622.584 kb on + strand, within PS417_21260at 4622.631 kb on + strand, within PS417_21260at 4622.632 kb on - strand, within PS417_21260at 4622.632 kb on - strand, within PS417_21260at 4622.676 kb on + strand, within PS417_21260at 4622.676 kb on + strand, within PS417_21260at 4622.676 kb on + strandat 4622.677 kb on - strandat 4622.677 kb on - strand, within PS417_21260at 4622.677 kb on - strand, within PS417_21260at 4622.677 kb on - strand, within PS417_21260at 4622.804 kb on + strand, within PS417_21260at 4622.823 kb on + strand, within PS417_21260at 4622.823 kb on + strand, within PS417_21260at 4622.824 kb on - strand, within PS417_21260at 4622.924 kb on - strandat 4622.924 kb on - strandat 4622.969 kb on - strandat 4622.969 kb on - strandat 4622.976 kb on - strandat 4622.992 kb on + strandat 4622.995 kb on + strandat 4623.101 kb on - strand, within PS417_21265at 4623.305 kb on - strandat 4623.311 kb on + strandat 4623.543 kb on + strand, within PS417_21270at 4623.543 kb on + strand, within PS417_21270at 4623.866 kb on - strandat 4623.913 kb on + strandat 4623.913 kb on + strandat 4623.914 kb on - strandat 4623.914 kb on - strandat 4623.937 kb on + strandat 4623.937 kb on + strandat 4623.937 kb on + strandat 4623.937 kb on + strandat 4623.937 kb on + strandat 4623.938 kb on - strandat 4623.938 kb on - strandat 4623.978 kb on - strandat 4623.985 kb on + strandat 4623.987 kb on + strandat 4624.038 kb on + strandat 4624.192 kb on - strand, within PS417_21275at 4624.192 kb on - strand, within PS417_21275at 4624.285 kb on + strand, within PS417_21275at 4624.285 kb on + strand, within PS417_21275at 4624.285 kb on + strand, within PS417_21275at 4624.285 kb on + strand, within PS417_21275at 4624.285 kb on + strand, within PS417_21275at 4624.342 kb on + strand, within PS417_21275at 4624.342 kb on + strand, within PS417_21275at 4624.343 kb on - strand, within PS417_21275at 4624.343 kb on - strandat 4624.343 kb on - strand, within PS417_21275at 4624.343 kb on - strand, within PS417_21275at 4624.456 kb on + strand, within PS417_21275at 4624.456 kb on + strand, within PS417_21275at 4624.456 kb on + strand, within PS417_21275at 4624.456 kb on + strandat 4624.456 kb on + strand, within PS417_21275at 4624.457 kb on - strand, within PS417_21275at 4624.457 kb on - strand, within PS417_21275at 4624.522 kb on + strand, within PS417_21275at 4624.522 kb on + strand, within PS417_21275at 4624.522 kb on + strand, within PS417_21275at 4624.522 kb on + strand, within PS417_21275at 4624.522 kb on + strand, within PS417_21275at 4624.523 kb on - strand, within PS417_21275at 4624.523 kb on - strand, within PS417_21275at 4624.546 kb on + strand, within PS417_21275at 4624.594 kb on + strand, within PS417_21275at 4624.594 kb on + strand, within PS417_21275at 4624.595 kb on - strand, within PS417_21275at 4624.595 kb on - strand, within PS417_21275at 4624.595 kb on - strand, within PS417_21275at 4624.598 kb on + strand, within PS417_21275at 4624.599 kb on - strand, within PS417_21275at 4624.837 kb on + strand, within PS417_21275at 4624.837 kb on + strand, within PS417_21275at 4624.837 kb on + strand, within PS417_21275at 4624.838 kb on - strand, within PS417_21275at 4624.838 kb on - strand, within PS417_21275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
remove
4,622,470 - +0.6
4,622,537 + +2.4
4,622,537 + PS417_21260 0.30 +0.4
4,622,537 + PS417_21260 0.30 -0.4
4,622,538 - PS417_21260 0.30 +0.3
4,622,538 - PS417_21260 0.30 -0.6
4,622,538 - PS417_21260 0.30 -0.8
4,622,538 - PS417_21260 0.30 +0.0
4,622,541 + PS417_21260 0.30 -0.3
4,622,541 + PS417_21260 0.30 +1.2
4,622,541 + PS417_21260 0.30 +0.2
4,622,541 + PS417_21260 0.30 -0.4
4,622,562 + PS417_21260 0.34 +0.0
4,622,563 - PS417_21260 0.34 +0.7
4,622,584 + PS417_21260 0.37 -0.3
4,622,631 + PS417_21260 0.45 -0.6
4,622,632 - PS417_21260 0.45 +1.0
4,622,632 - PS417_21260 0.45 +0.2
4,622,676 + PS417_21260 0.53 +0.5
4,622,676 + PS417_21260 0.53 +0.5
4,622,676 + +1.3
4,622,677 - +0.5
4,622,677 - PS417_21260 0.53 +1.3
4,622,677 - PS417_21260 0.53 -0.3
4,622,677 - PS417_21260 0.53 +0.0
4,622,804 + PS417_21260 0.74 -0.1
4,622,823 + PS417_21260 0.77 +0.5
4,622,823 + PS417_21260 0.77 +1.1
4,622,824 - PS417_21260 0.77 -0.2
4,622,924 - +0.3
4,622,924 - +0.7
4,622,969 - +1.2
4,622,969 - +0.9
4,622,976 - -0.3
4,622,992 + -0.5
4,622,995 + -0.5
4,623,101 - PS417_21265 0.38 +0.4
4,623,305 - -0.3
4,623,311 + -0.4
4,623,543 + PS417_21270 0.25 -0.9
4,623,543 + PS417_21270 0.25 -0.6
4,623,866 - -1.1
4,623,913 + -0.5
4,623,913 + +1.0
4,623,914 - +0.4
4,623,914 - -0.1
4,623,937 + +0.6
4,623,937 + -1.9
4,623,937 + -0.7
4,623,937 + +0.2
4,623,937 + +0.0
4,623,938 - +1.5
4,623,938 - +0.2
4,623,978 - +0.1
4,623,985 + +1.6
4,623,987 + -0.0
4,624,038 + -2.2
4,624,192 - PS417_21275 0.13 +0.3
4,624,192 - PS417_21275 0.13 -0.1
4,624,285 + PS417_21275 0.19 +1.1
4,624,285 + PS417_21275 0.19 +0.1
4,624,285 + PS417_21275 0.19 -0.7
4,624,285 + PS417_21275 0.19 +0.4
4,624,285 + PS417_21275 0.19 -1.7
4,624,342 + PS417_21275 0.23 +0.6
4,624,342 + PS417_21275 0.23 +1.0
4,624,343 - PS417_21275 0.23 -0.3
4,624,343 - +0.2
4,624,343 - PS417_21275 0.23 -0.4
4,624,343 - PS417_21275 0.23 -0.1
4,624,456 + PS417_21275 0.31 +1.5
4,624,456 + PS417_21275 0.31 +1.8
4,624,456 + PS417_21275 0.31 +0.7
4,624,456 + +1.9
4,624,456 + PS417_21275 0.31 -0.3
4,624,457 - PS417_21275 0.31 -0.8
4,624,457 - PS417_21275 0.31 +2.4
4,624,522 + PS417_21275 0.35 +1.1
4,624,522 + PS417_21275 0.35 -0.1
4,624,522 + PS417_21275 0.35 +1.0
4,624,522 + PS417_21275 0.35 -0.5
4,624,522 + PS417_21275 0.35 +1.2
4,624,523 - PS417_21275 0.36 +0.4
4,624,523 - PS417_21275 0.36 +0.3
4,624,546 + PS417_21275 0.37 -1.1
4,624,594 + PS417_21275 0.40 +0.6
4,624,594 + PS417_21275 0.40 +0.3
4,624,595 - PS417_21275 0.41 +0.5
4,624,595 - PS417_21275 0.41 -0.9
4,624,595 - PS417_21275 0.41 -0.6
4,624,598 + PS417_21275 0.41 -0.2
4,624,599 - PS417_21275 0.41 -2.2
4,624,837 + PS417_21275 0.57 +1.2
4,624,837 + PS417_21275 0.57 -0.5
4,624,837 + PS417_21275 0.57 +0.6
4,624,838 - PS417_21275 0.57 +1.2
4,624,838 - PS417_21275 0.57 +0.8

Or see this region's nucleotide sequence