Experiment: 80% Methanol 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21260 and PS417_21265 are separated by 41 nucleotides PS417_21265 and PS417_21270 are separated by 162 nucleotides PS417_21270 and PS417_21275 are separated by 104 nucleotides
PS417_21260: PS417_21260 - hypothetical protein, at 4,622,357 to 4,622,962
_21260
PS417_21265: PS417_21265 - hypothetical protein, at 4,623,004 to 4,623,258
_21265
PS417_21270: PS417_21270 - translation initiation factor 2, at 4,623,421 to 4,623,906
_21270
PS417_21275: PS417_21275 - GntR family transcriptional regulator, at 4,624,011 to 4,625,450
_21275
Position (kb)
4623
4624 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4622.470 kb on - strand at 4622.537 kb on + strand at 4622.537 kb on + strand, within PS417_21260 at 4622.537 kb on + strand, within PS417_21260 at 4622.538 kb on - strand, within PS417_21260 at 4622.538 kb on - strand, within PS417_21260 at 4622.538 kb on - strand, within PS417_21260 at 4622.538 kb on - strand, within PS417_21260 at 4622.541 kb on + strand, within PS417_21260 at 4622.541 kb on + strand, within PS417_21260 at 4622.541 kb on + strand, within PS417_21260 at 4622.541 kb on + strand, within PS417_21260 at 4622.562 kb on + strand, within PS417_21260 at 4622.563 kb on - strand, within PS417_21260 at 4622.584 kb on + strand, within PS417_21260 at 4622.631 kb on + strand, within PS417_21260 at 4622.632 kb on - strand, within PS417_21260 at 4622.632 kb on - strand, within PS417_21260 at 4622.676 kb on + strand, within PS417_21260 at 4622.676 kb on + strand, within PS417_21260 at 4622.676 kb on + strand at 4622.677 kb on - strand at 4622.677 kb on - strand, within PS417_21260 at 4622.677 kb on - strand, within PS417_21260 at 4622.677 kb on - strand, within PS417_21260 at 4622.804 kb on + strand, within PS417_21260 at 4622.823 kb on + strand, within PS417_21260 at 4622.823 kb on + strand, within PS417_21260 at 4622.824 kb on - strand, within PS417_21260 at 4622.924 kb on - strand at 4622.924 kb on - strand at 4622.969 kb on - strand at 4622.969 kb on - strand at 4622.976 kb on - strand at 4622.992 kb on + strand at 4622.995 kb on + strand at 4623.101 kb on - strand, within PS417_21265 at 4623.305 kb on - strand at 4623.311 kb on + strand at 4623.543 kb on + strand, within PS417_21270 at 4623.543 kb on + strand, within PS417_21270 at 4623.866 kb on - strand at 4623.913 kb on + strand at 4623.913 kb on + strand at 4623.914 kb on - strand at 4623.914 kb on - strand at 4623.937 kb on + strand at 4623.937 kb on + strand at 4623.937 kb on + strand at 4623.937 kb on + strand at 4623.937 kb on + strand at 4623.938 kb on - strand at 4623.938 kb on - strand at 4623.978 kb on - strand at 4623.985 kb on + strand at 4623.987 kb on + strand at 4624.038 kb on + strand at 4624.192 kb on - strand, within PS417_21275 at 4624.192 kb on - strand, within PS417_21275 at 4624.285 kb on + strand, within PS417_21275 at 4624.285 kb on + strand, within PS417_21275 at 4624.285 kb on + strand, within PS417_21275 at 4624.285 kb on + strand, within PS417_21275 at 4624.285 kb on + strand, within PS417_21275 at 4624.342 kb on + strand, within PS417_21275 at 4624.342 kb on + strand, within PS417_21275 at 4624.343 kb on - strand, within PS417_21275 at 4624.343 kb on - strand at 4624.343 kb on - strand, within PS417_21275 at 4624.343 kb on - strand, within PS417_21275 at 4624.456 kb on + strand, within PS417_21275 at 4624.456 kb on + strand, within PS417_21275 at 4624.456 kb on + strand, within PS417_21275 at 4624.456 kb on + strand at 4624.456 kb on + strand, within PS417_21275 at 4624.457 kb on - strand, within PS417_21275 at 4624.457 kb on - strand, within PS417_21275 at 4624.522 kb on + strand, within PS417_21275 at 4624.522 kb on + strand, within PS417_21275 at 4624.522 kb on + strand, within PS417_21275 at 4624.522 kb on + strand, within PS417_21275 at 4624.522 kb on + strand, within PS417_21275 at 4624.523 kb on - strand, within PS417_21275 at 4624.523 kb on - strand, within PS417_21275 at 4624.546 kb on + strand, within PS417_21275 at 4624.594 kb on + strand, within PS417_21275 at 4624.594 kb on + strand, within PS417_21275 at 4624.595 kb on - strand, within PS417_21275 at 4624.595 kb on - strand, within PS417_21275 at 4624.595 kb on - strand, within PS417_21275 at 4624.598 kb on + strand, within PS417_21275 at 4624.599 kb on - strand, within PS417_21275 at 4624.837 kb on + strand, within PS417_21275 at 4624.837 kb on + strand, within PS417_21275 at 4624.837 kb on + strand, within PS417_21275 at 4624.838 kb on - strand, within PS417_21275 at 4624.838 kb on - strand, within PS417_21275
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress remove 4,622,470 - +0.6 4,622,537 + +2.4 4,622,537 + PS417_21260 0.30 +0.4 4,622,537 + PS417_21260 0.30 -0.4 4,622,538 - PS417_21260 0.30 +0.3 4,622,538 - PS417_21260 0.30 -0.6 4,622,538 - PS417_21260 0.30 -0.8 4,622,538 - PS417_21260 0.30 +0.0 4,622,541 + PS417_21260 0.30 -0.3 4,622,541 + PS417_21260 0.30 +1.2 4,622,541 + PS417_21260 0.30 +0.2 4,622,541 + PS417_21260 0.30 -0.4 4,622,562 + PS417_21260 0.34 +0.0 4,622,563 - PS417_21260 0.34 +0.7 4,622,584 + PS417_21260 0.37 -0.3 4,622,631 + PS417_21260 0.45 -0.6 4,622,632 - PS417_21260 0.45 +1.0 4,622,632 - PS417_21260 0.45 +0.2 4,622,676 + PS417_21260 0.53 +0.5 4,622,676 + PS417_21260 0.53 +0.5 4,622,676 + +1.3 4,622,677 - +0.5 4,622,677 - PS417_21260 0.53 +1.3 4,622,677 - PS417_21260 0.53 -0.3 4,622,677 - PS417_21260 0.53 +0.0 4,622,804 + PS417_21260 0.74 -0.1 4,622,823 + PS417_21260 0.77 +0.5 4,622,823 + PS417_21260 0.77 +1.1 4,622,824 - PS417_21260 0.77 -0.2 4,622,924 - +0.3 4,622,924 - +0.7 4,622,969 - +1.2 4,622,969 - +0.9 4,622,976 - -0.3 4,622,992 + -0.5 4,622,995 + -0.5 4,623,101 - PS417_21265 0.38 +0.4 4,623,305 - -0.3 4,623,311 + -0.4 4,623,543 + PS417_21270 0.25 -0.9 4,623,543 + PS417_21270 0.25 -0.6 4,623,866 - -1.1 4,623,913 + -0.5 4,623,913 + +1.0 4,623,914 - +0.4 4,623,914 - -0.1 4,623,937 + +0.6 4,623,937 + -1.9 4,623,937 + -0.7 4,623,937 + +0.2 4,623,937 + +0.0 4,623,938 - +1.5 4,623,938 - +0.2 4,623,978 - +0.1 4,623,985 + +1.6 4,623,987 + -0.0 4,624,038 + -2.2 4,624,192 - PS417_21275 0.13 +0.3 4,624,192 - PS417_21275 0.13 -0.1 4,624,285 + PS417_21275 0.19 +1.1 4,624,285 + PS417_21275 0.19 +0.1 4,624,285 + PS417_21275 0.19 -0.7 4,624,285 + PS417_21275 0.19 +0.4 4,624,285 + PS417_21275 0.19 -1.7 4,624,342 + PS417_21275 0.23 +0.6 4,624,342 + PS417_21275 0.23 +1.0 4,624,343 - PS417_21275 0.23 -0.3 4,624,343 - +0.2 4,624,343 - PS417_21275 0.23 -0.4 4,624,343 - PS417_21275 0.23 -0.1 4,624,456 + PS417_21275 0.31 +1.5 4,624,456 + PS417_21275 0.31 +1.8 4,624,456 + PS417_21275 0.31 +0.7 4,624,456 + +1.9 4,624,456 + PS417_21275 0.31 -0.3 4,624,457 - PS417_21275 0.31 -0.8 4,624,457 - PS417_21275 0.31 +2.4 4,624,522 + PS417_21275 0.35 +1.1 4,624,522 + PS417_21275 0.35 -0.1 4,624,522 + PS417_21275 0.35 +1.0 4,624,522 + PS417_21275 0.35 -0.5 4,624,522 + PS417_21275 0.35 +1.2 4,624,523 - PS417_21275 0.36 +0.4 4,624,523 - PS417_21275 0.36 +0.3 4,624,546 + PS417_21275 0.37 -1.1 4,624,594 + PS417_21275 0.40 +0.6 4,624,594 + PS417_21275 0.40 +0.3 4,624,595 - PS417_21275 0.41 +0.5 4,624,595 - PS417_21275 0.41 -0.9 4,624,595 - PS417_21275 0.41 -0.6 4,624,598 + PS417_21275 0.41 -0.2 4,624,599 - PS417_21275 0.41 -2.2 4,624,837 + PS417_21275 0.57 +1.2 4,624,837 + PS417_21275 0.57 -0.5 4,624,837 + PS417_21275 0.57 +0.6 4,624,838 - PS417_21275 0.57 +1.2 4,624,838 - PS417_21275 0.57 +0.8
Or see this region's nucleotide sequence