Strain Fitness in Pseudomonas simiae WCS417 around PS417_13895

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13890 and PS417_13895 overlap by 7 nucleotidesPS417_13895 and PS417_13900 overlap by 4 nucleotidesPS417_13900 and PS417_13905 are separated by 15 nucleotides PS417_13890: PS417_13890 - histidine kinase, at 3,051,751 to 3,052,944 _13890 PS417_13895: PS417_13895 - chemotaxis protein CheB, at 3,052,938 to 3,053,543 _13895 PS417_13900: PS417_13900 - chemotaxis protein CheR, at 3,053,540 to 3,054,355 _13900 PS417_13905: PS417_13905 - chemotaxis protein CheY, at 3,054,371 to 3,057,874 _13905 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -3 -2 -1 0 1at 3052.402 kb on - strand, within PS417_13890at 3052.846 kb on + strandat 3052.847 kb on - strandat 3052.935 kb on + strandat 3052.936 kb on - strandat 3052.939 kb on + strandat 3052.940 kb on - strandat 3052.940 kb on - strandat 3052.952 kb on - strandat 3053.075 kb on + strand, within PS417_13895at 3053.075 kb on + strand, within PS417_13895at 3053.164 kb on + strand, within PS417_13895at 3053.165 kb on - strand, within PS417_13895at 3053.503 kb on - strandat 3053.503 kb on - strandat 3053.543 kb on + strandat 3053.747 kb on + strand, within PS417_13900at 3053.835 kb on + strand, within PS417_13900at 3053.838 kb on + strand, within PS417_13900at 3053.838 kb on + strand, within PS417_13900at 3053.838 kb on + strand, within PS417_13900at 3053.874 kb on + strand, within PS417_13900at 3053.886 kb on + strand, within PS417_13900at 3054.297 kb on + strandat 3054.373 kb on - strandat 3054.447 kb on + strandat 3054.447 kb on + strandat 3054.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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3,052,402 - PS417_13890 0.55 -1.3
3,052,846 + -0.1
3,052,847 - -2.1
3,052,935 + -0.6
3,052,936 - -0.4
3,052,939 + +1.5
3,052,940 - -0.7
3,052,940 - +0.6
3,052,952 - +0.5
3,053,075 + PS417_13895 0.23 -1.6
3,053,075 + PS417_13895 0.23 -2.9
3,053,164 + PS417_13895 0.37 -1.8
3,053,165 - PS417_13895 0.37 +1.1
3,053,503 - -0.7
3,053,503 - -0.4
3,053,543 + -1.4
3,053,747 + PS417_13900 0.25 -0.4
3,053,835 + PS417_13900 0.36 -0.3
3,053,838 + PS417_13900 0.37 -0.2
3,053,838 + PS417_13900 0.37 -0.9
3,053,838 + PS417_13900 0.37 -1.0
3,053,874 + PS417_13900 0.41 -0.5
3,053,886 + PS417_13900 0.42 -0.9
3,054,297 + +0.0
3,054,373 - +0.5
3,054,447 + -0.7
3,054,447 + +0.0
3,054,448 - -0.9

Or see this region's nucleotide sequence