Strain Fitness in Pseudomonas simiae WCS417 around PS417_11810

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11805 and PS417_11810 are separated by 17 nucleotidesPS417_11810 and PS417_11815 are separated by 29 nucleotidesPS417_11815 and PS417_11820 are separated by 58 nucleotides PS417_11805: PS417_11805 - D-threo-aldose 1-dehydrogenase, at 2,569,316 to 2,570,320 _11805 PS417_11810: PS417_11810 - oxidoreductase, at 2,570,338 to 2,571,135 _11810 PS417_11815: PS417_11815 - XoxI, at 2,571,165 to 2,571,581 _11815 PS417_11820: PS417_11820 - histidine kinase, at 2,571,640 to 2,573,031 _11820 Position (kb) 2570 2571 2572Strain fitness (log2 ratio) -2 -1 0 1at 2569.572 kb on + strand, within PS417_11805at 2569.572 kb on + strand, within PS417_11805at 2569.573 kb on - strand, within PS417_11805at 2569.772 kb on + strand, within PS417_11805at 2569.772 kb on + strand, within PS417_11805at 2569.857 kb on + strand, within PS417_11805at 2569.857 kb on + strand, within PS417_11805at 2569.935 kb on - strand, within PS417_11805at 2570.248 kb on + strandat 2570.318 kb on + strandat 2570.363 kb on + strandat 2570.611 kb on - strand, within PS417_11810at 2570.666 kb on - strand, within PS417_11810at 2570.666 kb on - strand, within PS417_11810at 2570.707 kb on + strandat 2570.798 kb on - strand, within PS417_11810at 2571.157 kb on + strandat 2571.157 kb on + strandat 2571.162 kb on - strandat 2571.372 kb on + strand, within PS417_11815at 2571.372 kb on + strand, within PS417_11815at 2571.372 kb on + strand, within PS417_11815at 2571.378 kb on + strand, within PS417_11815at 2571.378 kb on + strand, within PS417_11815at 2571.378 kb on + strand, within PS417_11815at 2571.379 kb on - strand, within PS417_11815at 2571.596 kb on - strandat 2572.055 kb on + strand, within PS417_11820at 2572.055 kb on + strand, within PS417_11820

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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2,569,572 + PS417_11805 0.25 -0.1
2,569,572 + PS417_11805 0.25 -0.3
2,569,573 - PS417_11805 0.26 +0.4
2,569,772 + PS417_11805 0.45 -0.4
2,569,772 + PS417_11805 0.45 -0.3
2,569,857 + PS417_11805 0.54 -0.1
2,569,857 + PS417_11805 0.54 -0.3
2,569,935 - PS417_11805 0.62 -0.1
2,570,248 + -0.8
2,570,318 + -0.4
2,570,363 + -0.3
2,570,611 - PS417_11810 0.34 -0.3
2,570,666 - PS417_11810 0.41 -2.0
2,570,666 - PS417_11810 0.41 -0.2
2,570,707 + -0.7
2,570,798 - PS417_11810 0.58 -0.1
2,571,157 + -0.1
2,571,157 + -1.4
2,571,162 - +0.1
2,571,372 + PS417_11815 0.50 +0.4
2,571,372 + PS417_11815 0.50 -0.7
2,571,372 + PS417_11815 0.50 +0.0
2,571,378 + PS417_11815 0.51 -0.2
2,571,378 + PS417_11815 0.51 -0.6
2,571,378 + PS417_11815 0.51 -0.7
2,571,379 - PS417_11815 0.51 -1.1
2,571,596 - -0.5
2,572,055 + PS417_11820 0.30 -0.1
2,572,055 + PS417_11820 0.30 -0.1

Or see this region's nucleotide sequence