Experiment: 80% Methanol 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00985 and PS417_00990 are separated by 176 nucleotides PS417_00990 and PS417_00995 are separated by 226 nucleotides PS417_00995 and PS417_01000 are separated by 50 nucleotides
PS417_00985: PS417_00985 - MFS transporter, at 216,493 to 217,662
_00985
PS417_00990: PS417_00990 - LysR family transcriptional regulator, at 217,839 to 218,690
_00990
PS417_00995: PS417_00995 - alpha/beta hydrolase, at 218,917 to 219,498
_00995
PS417_01000: PS417_01000 - Fis family transcriptional regulator, at 219,549 to 220,475
_01000
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2 at 216.980 kb on + strand, within PS417_00985 at 217.010 kb on + strand, within PS417_00985 at 217.034 kb on + strand, within PS417_00985 at 217.257 kb on - strand, within PS417_00985 at 217.478 kb on - strand, within PS417_00985 at 217.650 kb on + strand at 217.683 kb on + strand at 217.684 kb on - strand at 217.765 kb on + strand at 217.766 kb on - strand at 217.981 kb on + strand, within PS417_00990 at 217.982 kb on - strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.040 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.516 kb on + strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.517 kb on - strand, within PS417_00990 at 218.540 kb on - strand, within PS417_00990 at 218.610 kb on + strand at 218.610 kb on + strand at 218.610 kb on + strand at 218.627 kb on - strand at 218.627 kb on - strand at 218.839 kb on - strand at 218.874 kb on + strand at 218.875 kb on + strand at 218.875 kb on + strand at 218.875 kb on + strand at 218.877 kb on + strand at 218.878 kb on - strand at 219.188 kb on + strand, within PS417_00995 at 219.399 kb on + strand, within PS417_00995 at 219.446 kb on - strand at 219.452 kb on - strand at 219.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress remove 216,980 + PS417_00985 0.42 -0.3 217,010 + PS417_00985 0.44 -0.9 217,034 + PS417_00985 0.46 -1.8 217,257 - PS417_00985 0.65 +0.0 217,478 - PS417_00985 0.84 -0.6 217,650 + +1.4 217,683 + -0.4 217,684 - +1.2 217,765 + +1.1 217,766 - -0.3 217,981 + PS417_00990 0.17 +1.7 217,982 - PS417_00990 0.17 +1.1 218,040 + PS417_00990 0.24 +0.6 218,040 + PS417_00990 0.24 -0.0 218,516 + PS417_00990 0.79 +2.6 218,516 + PS417_00990 0.79 -0.3 218,517 - PS417_00990 0.80 -0.4 218,517 - PS417_00990 0.80 -0.2 218,540 - PS417_00990 0.82 +1.0 218,610 + -0.6 218,610 + +0.1 218,610 + -0.9 218,627 - +0.3 218,627 - -0.5 218,839 - -0.8 218,874 + -0.2 218,875 + -0.3 218,875 + -0.1 218,875 + +0.0 218,877 + +0.4 218,878 - +0.2 219,188 + PS417_00995 0.47 -0.0 219,399 + PS417_00995 0.83 -0.3 219,446 - -0.5 219,452 - +0.9 219,522 + -1.5
Or see this region's nucleotide sequence