Strain Fitness in Pseudomonas simiae WCS417 around PS417_09865

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09865 and PS417_09870 are separated by 147 nucleotides PS417_09865: PS417_09865 - hypothetical protein, at 2,136,867 to 2,137,124 _09865 PS417_09870: PS417_09870 - hypothetical protein, at 2,137,272 to 2,138,189 _09870 PS417_09875: PS417_09875 - hypothetical protein, at 2,138,084 to 2,138,617 _09875 Position (kb) 2136 2137 2138Strain fitness (log2 ratio) -1 0 1at 2135.899 kb on - strandat 2135.997 kb on + strandat 2136.002 kb on - strandat 2136.103 kb on - strandat 2136.254 kb on - strandat 2136.316 kb on + strandat 2136.317 kb on - strandat 2136.317 kb on - strandat 2136.351 kb on + strandat 2136.466 kb on + strandat 2136.486 kb on - strandat 2136.489 kb on - strandat 2136.497 kb on - strandat 2136.515 kb on + strandat 2136.613 kb on - strandat 2136.614 kb on + strandat 2136.614 kb on + strandat 2136.699 kb on + strandat 2136.700 kb on - strandat 2136.701 kb on + strandat 2136.739 kb on + strandat 2136.739 kb on + strandat 2136.803 kb on - strandat 2136.840 kb on + strandat 2136.916 kb on + strand, within PS417_09865at 2137.050 kb on + strand, within PS417_09865at 2137.126 kb on - strandat 2137.186 kb on + strandat 2137.584 kb on + strand, within PS417_09870at 2137.584 kb on + strand, within PS417_09870at 2137.584 kb on + strand, within PS417_09870at 2137.584 kb on + strand, within PS417_09870at 2137.585 kb on - strand, within PS417_09870at 2137.585 kb on - strand, within PS417_09870at 2137.647 kb on + strand, within PS417_09870at 2137.647 kb on + strand, within PS417_09870at 2137.647 kb on + strand, within PS417_09870at 2137.647 kb on + strand, within PS417_09870at 2137.648 kb on - strand, within PS417_09870at 2137.648 kb on - strand, within PS417_09870at 2137.685 kb on + strand, within PS417_09870at 2137.709 kb on + strand, within PS417_09870at 2137.902 kb on + strand, within PS417_09870at 2137.903 kb on - strand, within PS417_09870at 2137.945 kb on + strand, within PS417_09870at 2137.946 kb on - strand, within PS417_09870at 2138.069 kb on + strand, within PS417_09870

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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2,135,899 - +0.2
2,135,997 + +0.1
2,136,002 - +0.1
2,136,103 - +1.2
2,136,254 - +0.8
2,136,316 + +0.7
2,136,317 - -0.4
2,136,317 - -0.5
2,136,351 + -0.3
2,136,466 + -0.2
2,136,486 - -0.2
2,136,489 - -0.5
2,136,497 - -0.6
2,136,515 + +1.7
2,136,613 - +0.3
2,136,614 + -0.0
2,136,614 + -0.2
2,136,699 + +0.0
2,136,700 - +1.2
2,136,701 + +0.9
2,136,739 + +0.2
2,136,739 + -0.7
2,136,803 - -0.5
2,136,840 + +0.8
2,136,916 + PS417_09865 0.19 -1.0
2,137,050 + PS417_09865 0.71 -1.2
2,137,126 - -0.6
2,137,186 + +0.1
2,137,584 + PS417_09870 0.34 +0.3
2,137,584 + PS417_09870 0.34 -0.5
2,137,584 + PS417_09870 0.34 -0.3
2,137,584 + PS417_09870 0.34 +0.2
2,137,585 - PS417_09870 0.34 -0.6
2,137,585 - PS417_09870 0.34 -0.0
2,137,647 + PS417_09870 0.41 +1.6
2,137,647 + PS417_09870 0.41 -0.1
2,137,647 + PS417_09870 0.41 -0.1
2,137,647 + PS417_09870 0.41 +0.0
2,137,648 - PS417_09870 0.41 +0.5
2,137,648 - PS417_09870 0.41 -0.2
2,137,685 + PS417_09870 0.45 -0.6
2,137,709 + PS417_09870 0.48 -0.4
2,137,902 + PS417_09870 0.69 +0.5
2,137,903 - PS417_09870 0.69 -0.2
2,137,945 + PS417_09870 0.73 -0.1
2,137,946 - PS417_09870 0.73 +0.0
2,138,069 + PS417_09870 0.87 -0.0

Or see this region's nucleotide sequence