Strain Fitness in Pseudomonas simiae WCS417 around PS417_06620

Experiment: 80% Methanol 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_06615 and PS417_06620 are separated by 341 nucleotidesPS417_06620 and PS417_06625 are separated by 309 nucleotides PS417_06615: PS417_06615 - ABC transporter for branched-chain amino acids, substrate-binding component (from data), at 1,463,713 to 1,464,840 _06615 PS417_06620: PS417_06620 - hypothetical protein, at 1,465,182 to 1,465,484 _06620 PS417_06625: PS417_06625 - hypothetical protein, at 1,465,794 to 1,467,971 _06625 Position (kb) 1465 1466Strain fitness (log2 ratio) -2 -1 0 1 2at 1464.494 kb on + strand, within PS417_06615at 1464.494 kb on + strand, within PS417_06615at 1464.494 kb on + strand, within PS417_06615at 1464.495 kb on - strand, within PS417_06615at 1464.495 kb on - strand, within PS417_06615at 1464.614 kb on + strand, within PS417_06615at 1464.615 kb on - strand, within PS417_06615at 1464.708 kb on - strand, within PS417_06615at 1464.729 kb on + strandat 1464.730 kb on - strandat 1464.825 kb on + strandat 1464.825 kb on + strandat 1464.826 kb on - strandat 1464.829 kb on - strandat 1464.829 kb on - strandat 1464.835 kb on - strandat 1464.854 kb on + strandat 1464.855 kb on - strandat 1464.855 kb on - strandat 1464.862 kb on + strandat 1464.872 kb on - strandat 1464.911 kb on - strandat 1465.056 kb on - strandat 1465.196 kb on + strandat 1465.197 kb on - strandat 1465.207 kb on - strandat 1465.237 kb on + strand, within PS417_06620at 1465.279 kb on + strand, within PS417_06620at 1465.337 kb on + strandat 1465.338 kb on - strand, within PS417_06620at 1465.482 kb on + strandat 1465.482 kb on + strandat 1465.483 kb on - strandat 1465.525 kb on + strandat 1465.525 kb on + strandat 1465.525 kb on + strandat 1465.525 kb on + strandat 1465.542 kb on - strandat 1465.674 kb on + strandat 1465.795 kb on + strandat 1465.796 kb on - strandat 1465.858 kb on + strandat 1465.874 kb on - strandat 1465.960 kb on + strandat 1465.972 kb on + strandat 1465.973 kb on - strandat 1465.973 kb on - strandat 1465.990 kb on + strandat 1466.249 kb on - strand, within PS417_06625at 1466.249 kb on - strand, within PS417_06625at 1466.265 kb on - strand, within PS417_06625at 1466.265 kb on - strand, within PS417_06625at 1466.314 kb on + strand, within PS417_06625at 1466.314 kb on + strand, within PS417_06625at 1466.326 kb on + strand, within PS417_06625at 1466.326 kb on + strand, within PS417_06625at 1466.326 kb on + strand, within PS417_06625at 1466.423 kb on - strand, within PS417_06625at 1466.444 kb on - strand, within PS417_06625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
remove
1,464,494 + PS417_06615 0.69 -2.1
1,464,494 + PS417_06615 0.69 +0.2
1,464,494 + PS417_06615 0.69 -0.0
1,464,495 - PS417_06615 0.69 +1.4
1,464,495 - PS417_06615 0.69 -0.2
1,464,614 + PS417_06615 0.80 +0.2
1,464,615 - PS417_06615 0.80 -0.8
1,464,708 - PS417_06615 0.88 -0.1
1,464,729 + -0.2
1,464,730 - -0.2
1,464,825 + -1.5
1,464,825 + -2.3
1,464,826 - +0.2
1,464,829 - -0.3
1,464,829 - -0.1
1,464,835 - +0.8
1,464,854 + -1.3
1,464,855 - +0.6
1,464,855 - +1.5
1,464,862 + +0.4
1,464,872 - -0.3
1,464,911 - +0.5
1,465,056 - +0.7
1,465,196 + +0.0
1,465,197 - -0.1
1,465,207 - +0.1
1,465,237 + PS417_06620 0.18 -1.7
1,465,279 + PS417_06620 0.32 -0.3
1,465,337 + +0.5
1,465,338 - PS417_06620 0.51 -0.2
1,465,482 + -0.1
1,465,482 + -0.3
1,465,483 - +0.2
1,465,525 + -0.3
1,465,525 + -0.2
1,465,525 + -0.4
1,465,525 + -1.9
1,465,542 - +2.4
1,465,674 + -1.0
1,465,795 + -1.5
1,465,796 - -0.6
1,465,858 + +0.1
1,465,874 - +0.7
1,465,960 + +0.1
1,465,972 + -0.3
1,465,973 - +0.4
1,465,973 - +0.7
1,465,990 + -0.4
1,466,249 - PS417_06625 0.21 -0.5
1,466,249 - PS417_06625 0.21 +1.0
1,466,265 - PS417_06625 0.22 +0.4
1,466,265 - PS417_06625 0.22 +0.2
1,466,314 + PS417_06625 0.24 -1.5
1,466,314 + PS417_06625 0.24 -1.7
1,466,326 + PS417_06625 0.24 -0.0
1,466,326 + PS417_06625 0.24 +0.2
1,466,326 + PS417_06625 0.24 -0.1
1,466,423 - PS417_06625 0.29 -0.7
1,466,444 - PS417_06625 0.30 -0.0

Or see this region's nucleotide sequence