Strain Fitness in Pseudomonas simiae WCS417 around PS417_05860

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05855 and PS417_05860 are separated by 147 nucleotidesPS417_05860 and PS417_05865 are separated by 3 nucleotidesPS417_05865 and PS417_05870 are separated by 65 nucleotides PS417_05855: PS417_05855 - ferredoxin-NADP reductase, at 1,301,206 to 1,301,985 _05855 PS417_05860: PS417_05860 - hypothetical protein, at 1,302,133 to 1,302,828 _05860 PS417_05865: PS417_05865 - hypothetical protein, at 1,302,832 to 1,303,293 _05865 PS417_05870: PS417_05870 - RNA-binding protein S4, at 1,303,359 to 1,304,069 _05870 Position (kb) 1302 1303Strain fitness (log2 ratio) -2 -1 0 1at 1301.167 kb on + strandat 1301.983 kb on + strandat 1302.058 kb on + strandat 1302.058 kb on + strandat 1302.058 kb on + strandat 1302.059 kb on - strandat 1302.059 kb on - strandat 1302.059 kb on - strandat 1302.062 kb on + strandat 1302.063 kb on - strandat 1302.222 kb on - strand, within PS417_05860at 1302.431 kb on + strand, within PS417_05860at 1302.431 kb on + strand, within PS417_05860at 1302.432 kb on - strand, within PS417_05860at 1302.582 kb on + strand, within PS417_05860at 1302.822 kb on - strandat 1302.822 kb on - strandat 1302.822 kb on - strandat 1302.822 kb on - strandat 1302.834 kb on - strandat 1303.175 kb on + strand, within PS417_05865at 1303.175 kb on + strand, within PS417_05865at 1303.259 kb on + strandat 1303.260 kb on - strandat 1303.276 kb on + strandat 1303.276 kb on + strandat 1303.277 kb on - strandat 1303.277 kb on - strandat 1303.310 kb on - strandat 1303.576 kb on + strand, within PS417_05870at 1303.577 kb on - strandat 1303.577 kb on - strand, within PS417_05870at 1303.642 kb on + strand, within PS417_05870at 1303.642 kb on + strand, within PS417_05870at 1303.642 kb on + strand, within PS417_05870at 1303.642 kb on + strand, within PS417_05870at 1303.642 kb on + strand, within PS417_05870at 1303.643 kb on - strand, within PS417_05870

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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1,301,167 + -0.8
1,301,983 + -2.4
1,302,058 + +0.1
1,302,058 + -0.8
1,302,058 + +0.8
1,302,059 - -0.3
1,302,059 - +0.0
1,302,059 - -0.1
1,302,062 + -0.4
1,302,063 - -0.0
1,302,222 - PS417_05860 0.13 -1.7
1,302,431 + PS417_05860 0.43 -1.0
1,302,431 + PS417_05860 0.43 -1.0
1,302,432 - PS417_05860 0.43 -0.7
1,302,582 + PS417_05860 0.65 -0.2
1,302,822 - -1.7
1,302,822 - +0.3
1,302,822 - +0.7
1,302,822 - +0.3
1,302,834 - -1.6
1,303,175 + PS417_05865 0.74 +0.4
1,303,175 + PS417_05865 0.74 +0.2
1,303,259 + +0.1
1,303,260 - -0.2
1,303,276 + -0.3
1,303,276 + +0.3
1,303,277 - -0.4
1,303,277 - +1.7
1,303,310 - -0.9
1,303,576 + PS417_05870 0.31 +0.7
1,303,577 - -0.2
1,303,577 - PS417_05870 0.31 -0.3
1,303,642 + PS417_05870 0.40 -0.0
1,303,642 + PS417_05870 0.40 +0.1
1,303,642 + PS417_05870 0.40 +0.8
1,303,642 + PS417_05870 0.40 -0.5
1,303,642 + PS417_05870 0.40 +0.2
1,303,643 - PS417_05870 0.40 +0.0

Or see this region's nucleotide sequence