Strain Fitness in Pseudomonas simiae WCS417 around PS417_28185

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28175 and PS417_28180 are separated by 10 nucleotidesPS417_28180 and PS417_28185 are separated by 135 nucleotidesPS417_28185 and PS417_28190 are separated by 112 nucleotidesPS417_28190 and PS417_28195 overlap by 4 nucleotides PS417_28175: PS417_28175 - GNAT family acetyltransferase, at 6,084,397 to 6,084,843 _28175 PS417_28180: PS417_28180 - GNAT family acetyltransferase, at 6,084,854 to 6,085,525 _28180 PS417_28185: PS417_28185 - homocysteine methyltransferase, at 6,085,661 to 6,086,557 _28185 PS417_28190: PS417_28190 - amino acid ABC transporter substrate-binding protein, at 6,086,670 to 6,087,491 _28190 PS417_28195: PS417_28195 - amino acid ABC transporter permease, at 6,087,488 to 6,088,318 _28195 Position (kb) 6085 6086 6087Strain fitness (log2 ratio) -2 -1 0 1at 6085.013 kb on + strand, within PS417_28180at 6085.013 kb on + strand, within PS417_28180at 6085.014 kb on - strand, within PS417_28180at 6085.091 kb on + strand, within PS417_28180at 6085.129 kb on - strand, within PS417_28180at 6085.242 kb on - strand, within PS417_28180at 6085.242 kb on - strand, within PS417_28180at 6085.242 kb on - strand, within PS417_28180at 6085.256 kb on + strand, within PS417_28180at 6085.256 kb on + strand, within PS417_28180at 6085.257 kb on - strand, within PS417_28180at 6085.257 kb on - strand, within PS417_28180at 6085.322 kb on + strand, within PS417_28180at 6085.322 kb on + strand, within PS417_28180at 6085.523 kb on + strandat 6085.768 kb on - strand, within PS417_28185at 6086.227 kb on - strand, within PS417_28185at 6086.379 kb on + strand, within PS417_28185at 6086.418 kb on + strand, within PS417_28185at 6086.418 kb on + strand, within PS417_28185at 6086.418 kb on + strand, within PS417_28185at 6086.419 kb on - strand, within PS417_28185at 6086.540 kb on + strandat 6086.540 kb on + strandat 6086.540 kb on + strandat 6086.567 kb on - strandat 6086.615 kb on + strandat 6087.016 kb on - strand, within PS417_28190at 6087.130 kb on - strand, within PS417_28190at 6087.137 kb on + strand, within PS417_28190at 6087.181 kb on - strand, within PS417_28190at 6087.211 kb on - strand, within PS417_28190at 6087.348 kb on + strand, within PS417_28190

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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6,085,013 + PS417_28180 0.24 -0.5
6,085,013 + PS417_28180 0.24 -0.2
6,085,014 - PS417_28180 0.24 +0.1
6,085,091 + PS417_28180 0.35 +0.0
6,085,129 - PS417_28180 0.41 -0.2
6,085,242 - PS417_28180 0.58 -0.8
6,085,242 - PS417_28180 0.58 +0.9
6,085,242 - PS417_28180 0.58 -0.3
6,085,256 + PS417_28180 0.60 -0.2
6,085,256 + PS417_28180 0.60 -0.5
6,085,257 - PS417_28180 0.60 -0.3
6,085,257 - PS417_28180 0.60 +0.0
6,085,322 + PS417_28180 0.70 +1.2
6,085,322 + PS417_28180 0.70 +0.6
6,085,523 + -0.0
6,085,768 - PS417_28185 0.12 -1.8
6,086,227 - PS417_28185 0.63 -1.1
6,086,379 + PS417_28185 0.80 +0.5
6,086,418 + PS417_28185 0.84 +0.1
6,086,418 + PS417_28185 0.84 -0.5
6,086,418 + PS417_28185 0.84 -1.3
6,086,419 - PS417_28185 0.85 -0.5
6,086,540 + +1.1
6,086,540 + -0.2
6,086,540 + +0.3
6,086,567 - -0.5
6,086,615 + -0.3
6,087,016 - PS417_28190 0.42 -0.8
6,087,130 - PS417_28190 0.56 +0.2
6,087,137 + PS417_28190 0.57 -0.3
6,087,181 - PS417_28190 0.62 +1.3
6,087,211 - PS417_28190 0.66 +0.6
6,087,348 + PS417_28190 0.82 -0.5

Or see this region's nucleotide sequence