Strain Fitness in Pseudomonas simiae WCS417 around PS417_25985

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25975 and PS417_25980 are separated by 257 nucleotidesPS417_25980 and PS417_25985 are separated by 106 nucleotidesPS417_25985 and PS417_25990 overlap by 4 nucleotidesPS417_25990 and PS417_25995 overlap by 8 nucleotides PS417_25975: PS417_25975 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 5,612,679 to 5,614,484 _25975 PS417_25980: PS417_25980 - pyrroloquinoline quinone biosynthesis protein PqqE, at 5,614,742 to 5,615,023 _25980 PS417_25985: PS417_25985 - dethiobiotin synthetase, at 5,615,130 to 5,615,810 _25985 PS417_25990: PS417_25990 - malonyl-CoA O-methyltransferase, at 5,615,807 to 5,616,619 _25990 PS417_25995: PS417_25995 - transporter, at 5,616,612 to 5,617,343 _25995 Position (kb) 5615 5616Strain fitness (log2 ratio) -2 -1 0 1 2at 5614.382 kb on + strandat 5614.475 kb on - strandat 5614.475 kb on - strandat 5614.491 kb on - strandat 5614.506 kb on + strandat 5614.506 kb on + strandat 5614.507 kb on - strandat 5614.507 kb on - strandat 5614.507 kb on - strandat 5614.507 kb on - strandat 5614.507 kb on - strandat 5614.564 kb on + strandat 5614.564 kb on + strandat 5614.565 kb on - strandat 5614.565 kb on - strandat 5614.565 kb on - strandat 5614.565 kb on - strandat 5614.671 kb on - strandat 5614.692 kb on + strandat 5614.693 kb on - strandat 5614.749 kb on + strandat 5614.749 kb on + strandat 5614.749 kb on + strandat 5614.749 kb on + strandat 5614.750 kb on - strandat 5614.750 kb on - strandat 5614.750 kb on - strandat 5614.750 kb on - strandat 5615.028 kb on + strandat 5615.029 kb on - strandat 5615.156 kb on - strandat 5615.279 kb on + strand, within PS417_25985at 5615.793 kb on - strandat 5615.793 kb on - strandat 5615.798 kb on - strandat 5615.811 kb on - strandat 5615.833 kb on - strandat 5615.833 kb on - strandat 5615.845 kb on - strandat 5615.951 kb on - strand, within PS417_25990at 5616.008 kb on + strand, within PS417_25990at 5616.008 kb on + strand, within PS417_25990at 5616.008 kb on + strand, within PS417_25990at 5616.008 kb on + strand, within PS417_25990at 5616.009 kb on - strand, within PS417_25990at 5616.009 kb on - strand, within PS417_25990at 5616.070 kb on - strand, within PS417_25990at 5616.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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5,614,382 + +0.7
5,614,475 - -0.5
5,614,475 - -0.6
5,614,491 - -0.3
5,614,506 + -0.1
5,614,506 + -0.4
5,614,507 - -0.6
5,614,507 - +0.2
5,614,507 - +2.7
5,614,507 - -0.4
5,614,507 - +0.8
5,614,564 + -0.1
5,614,564 + -0.2
5,614,565 - -0.7
5,614,565 - +0.1
5,614,565 - -1.0
5,614,565 - -0.1
5,614,671 - -0.5
5,614,692 + -0.2
5,614,693 - -1.6
5,614,749 + +0.4
5,614,749 + -1.4
5,614,749 + -1.1
5,614,749 + +0.0
5,614,750 - -0.4
5,614,750 - -0.2
5,614,750 - -0.8
5,614,750 - -0.4
5,615,028 + +0.1
5,615,029 - -0.1
5,615,156 - -0.5
5,615,279 + PS417_25985 0.22 -0.9
5,615,793 - -1.2
5,615,793 - -0.7
5,615,798 - -0.6
5,615,811 - -0.2
5,615,833 - +0.4
5,615,833 - -0.6
5,615,845 - -0.3
5,615,951 - PS417_25990 0.18 -0.0
5,616,008 + PS417_25990 0.25 +0.2
5,616,008 + PS417_25990 0.25 +0.2
5,616,008 + PS417_25990 0.25 -0.2
5,616,008 + PS417_25990 0.25 +0.1
5,616,009 - PS417_25990 0.25 +0.2
5,616,009 - PS417_25990 0.25 -2.4
5,616,070 - PS417_25990 0.32 -0.2
5,616,657 + +0.4

Or see this region's nucleotide sequence