Experiment: 80% Methanol 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25975 and PS417_25980 are separated by 257 nucleotides PS417_25980 and PS417_25985 are separated by 106 nucleotides PS417_25985 and PS417_25990 overlap by 4 nucleotides PS417_25990 and PS417_25995 overlap by 8 nucleotides
PS417_25975: PS417_25975 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) , at 5,612,679 to 5,614,484
_25975
PS417_25980: PS417_25980 - pyrroloquinoline quinone biosynthesis protein PqqE, at 5,614,742 to 5,615,023
_25980
PS417_25985: PS417_25985 - dethiobiotin synthetase, at 5,615,130 to 5,615,810
_25985
PS417_25990: PS417_25990 - malonyl-CoA O-methyltransferase, at 5,615,807 to 5,616,619
_25990
PS417_25995: PS417_25995 - transporter, at 5,616,612 to 5,617,343
_25995
Position (kb)
5615
5616 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5614.382 kb on + strand at 5614.475 kb on - strand at 5614.475 kb on - strand at 5614.491 kb on - strand at 5614.506 kb on + strand at 5614.506 kb on + strand at 5614.507 kb on - strand at 5614.507 kb on - strand at 5614.507 kb on - strand at 5614.507 kb on - strand at 5614.507 kb on - strand at 5614.564 kb on + strand at 5614.564 kb on + strand at 5614.565 kb on - strand at 5614.565 kb on - strand at 5614.565 kb on - strand at 5614.565 kb on - strand at 5614.671 kb on - strand at 5614.692 kb on + strand at 5614.693 kb on - strand at 5614.749 kb on + strand at 5614.749 kb on + strand at 5614.749 kb on + strand at 5614.749 kb on + strand at 5614.750 kb on - strand at 5614.750 kb on - strand at 5614.750 kb on - strand at 5614.750 kb on - strand at 5615.028 kb on + strand at 5615.029 kb on - strand at 5615.156 kb on - strand at 5615.279 kb on + strand, within PS417_25985 at 5615.793 kb on - strand at 5615.793 kb on - strand at 5615.798 kb on - strand at 5615.811 kb on - strand at 5615.833 kb on - strand at 5615.833 kb on - strand at 5615.845 kb on - strand at 5615.951 kb on - strand, within PS417_25990 at 5616.008 kb on + strand, within PS417_25990 at 5616.008 kb on + strand, within PS417_25990 at 5616.008 kb on + strand, within PS417_25990 at 5616.008 kb on + strand, within PS417_25990 at 5616.009 kb on - strand, within PS417_25990 at 5616.009 kb on - strand, within PS417_25990 at 5616.070 kb on - strand, within PS417_25990 at 5616.657 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress remove 5,614,382 + +0.7 5,614,475 - -0.5 5,614,475 - -0.6 5,614,491 - -0.3 5,614,506 + -0.1 5,614,506 + -0.4 5,614,507 - -0.6 5,614,507 - +0.2 5,614,507 - +2.7 5,614,507 - -0.4 5,614,507 - +0.8 5,614,564 + -0.1 5,614,564 + -0.2 5,614,565 - -0.7 5,614,565 - +0.1 5,614,565 - -1.0 5,614,565 - -0.1 5,614,671 - -0.5 5,614,692 + -0.2 5,614,693 - -1.6 5,614,749 + +0.4 5,614,749 + -1.4 5,614,749 + -1.1 5,614,749 + +0.0 5,614,750 - -0.4 5,614,750 - -0.2 5,614,750 - -0.8 5,614,750 - -0.4 5,615,028 + +0.1 5,615,029 - -0.1 5,615,156 - -0.5 5,615,279 + PS417_25985 0.22 -0.9 5,615,793 - -1.2 5,615,793 - -0.7 5,615,798 - -0.6 5,615,811 - -0.2 5,615,833 - +0.4 5,615,833 - -0.6 5,615,845 - -0.3 5,615,951 - PS417_25990 0.18 -0.0 5,616,008 + PS417_25990 0.25 +0.2 5,616,008 + PS417_25990 0.25 +0.2 5,616,008 + PS417_25990 0.25 -0.2 5,616,008 + PS417_25990 0.25 +0.1 5,616,009 - PS417_25990 0.25 +0.2 5,616,009 - PS417_25990 0.25 -2.4 5,616,070 - PS417_25990 0.32 -0.2 5,616,657 + +0.4
Or see this region's nucleotide sequence