Strain Fitness in Pseudomonas simiae WCS417 around PS417_22565

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22555 and PS417_22565 are separated by 257 nucleotidesPS417_22565 and PS417_22570 are separated by 350 nucleotidesPS417_22570 and PS417_22575 are separated by 89 nucleotides PS417_22555: PS417_22555 - chemotaxis protein, at 4,884,154 to 4,886,043 _22555 PS417_22565: PS417_22565 - formyltetrahydrofolate deformylase, at 4,886,301 to 4,887,149 _22565 PS417_22570: PS417_22570 - H-NS histone, at 4,887,500 to 4,887,874 _22570 PS417_22575: PS417_22575 - exonuclease I, at 4,887,964 to 4,889,391 _22575 Position (kb) 4886 4887 4888Strain fitness (log2 ratio) -2 -1 0 1at 4885.512 kb on + strand, within PS417_22555at 4885.513 kb on - strandat 4885.577 kb on + strand, within PS417_22555at 4885.578 kb on - strand, within PS417_22555at 4885.578 kb on - strand, within PS417_22555at 4886.234 kb on + strandat 4886.235 kb on - strandat 4886.235 kb on - strandat 4886.262 kb on - strandat 4886.489 kb on - strand, within PS417_22565at 4887.227 kb on + strandat 4887.228 kb on - strandat 4887.258 kb on + strandat 4887.261 kb on + strandat 4887.261 kb on + strandat 4887.283 kb on + strandat 4887.286 kb on - strandat 4887.408 kb on - strandat 4887.411 kb on + strandat 4887.427 kb on + strandat 4887.448 kb on + strandat 4887.449 kb on - strandat 4887.451 kb on + strandat 4887.451 kb on + strandat 4887.483 kb on + strandat 4887.483 kb on + strandat 4887.487 kb on + strandat 4887.488 kb on - strandat 4887.539 kb on - strand, within PS417_22570at 4887.936 kb on + strandat 4887.937 kb on - strandat 4887.974 kb on - strandat 4887.974 kb on - strandat 4887.998 kb on + strandat 4888.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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4,885,512 + PS417_22555 0.72 +0.3
4,885,513 - +0.0
4,885,577 + PS417_22555 0.75 +0.4
4,885,578 - PS417_22555 0.75 +0.0
4,885,578 - PS417_22555 0.75 +0.5
4,886,234 + +1.4
4,886,235 - -0.8
4,886,235 - -0.2
4,886,262 - +0.2
4,886,489 - PS417_22565 0.22 -0.4
4,887,227 + +0.7
4,887,228 - -0.5
4,887,258 + +0.8
4,887,261 + +0.1
4,887,261 + +0.0
4,887,283 + -1.2
4,887,286 - -1.4
4,887,408 - -0.1
4,887,411 + -1.0
4,887,427 + +0.5
4,887,448 + -0.5
4,887,449 - +0.2
4,887,451 + -0.6
4,887,451 + -0.1
4,887,483 + -0.6
4,887,483 + -0.1
4,887,487 + -0.1
4,887,488 - +0.5
4,887,539 - PS417_22570 0.10 -2.1
4,887,936 + -0.1
4,887,937 - +0.8
4,887,974 - +0.5
4,887,974 - +0.4
4,887,998 + -0.2
4,888,087 - -0.9

Or see this region's nucleotide sequence