Strain Fitness in Pseudomonas simiae WCS417 around PS417_20880

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20875 and PS417_20880 are separated by 2 nucleotidesPS417_20880 and PS417_20885 are separated by 280 nucleotides PS417_20875: PS417_20875 - chromosome segregation protein SMC, at 4,534,784 to 4,538,272 _20875 PS417_20880: PS417_20880 - GntR family transcriptional regulator, at 4,538,275 to 4,538,934 _20880 PS417_20885: PS417_20885 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 4,539,215 to 4,540,663 _20885 Position (kb) 4538 4539Strain fitness (log2 ratio) -1 0 1at 4537.392 kb on + strand, within PS417_20875at 4537.392 kb on + strand, within PS417_20875at 4537.621 kb on - strand, within PS417_20875at 4537.755 kb on + strand, within PS417_20875at 4537.790 kb on - strand, within PS417_20875at 4537.790 kb on - strand, within PS417_20875at 4537.929 kb on + strandat 4537.929 kb on + strandat 4537.930 kb on - strandat 4537.930 kb on - strandat 4538.442 kb on - strand, within PS417_20880at 4538.666 kb on + strand, within PS417_20880at 4538.666 kb on + strand, within PS417_20880at 4538.962 kb on - strandat 4538.978 kb on - strandat 4539.090 kb on + strandat 4539.091 kb on - strandat 4539.165 kb on - strandat 4539.193 kb on + strandat 4539.287 kb on + strandat 4539.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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4,537,392 + PS417_20875 0.75 +0.9
4,537,392 + PS417_20875 0.75 -0.5
4,537,621 - PS417_20875 0.81 +0.0
4,537,755 + PS417_20875 0.85 -0.3
4,537,790 - PS417_20875 0.86 -0.6
4,537,790 - PS417_20875 0.86 -0.4
4,537,929 + -0.2
4,537,929 + -0.6
4,537,930 - +0.4
4,537,930 - -0.2
4,538,442 - PS417_20880 0.25 -0.9
4,538,666 + PS417_20880 0.59 -1.5
4,538,666 + PS417_20880 0.59 -0.4
4,538,962 - +0.3
4,538,978 - -0.1
4,539,090 + -0.5
4,539,091 - -0.1
4,539,165 - -1.7
4,539,193 + -0.4
4,539,287 + -0.1
4,539,288 - -0.1

Or see this region's nucleotide sequence