Strain Fitness in Pseudomonas simiae WCS417 around PS417_20855

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20850 and PS417_20855 are separated by 20 nucleotidesPS417_20855 and PS417_20860 are separated by 453 nucleotides PS417_20850: PS417_20850 - hypothetical protein, at 4,527,009 to 4,528,970 _20850 PS417_20855: PS417_20855 - hypothetical protein, at 4,528,991 to 4,529,422 _20855 PS417_20860: PS417_20860 - DNA polymerase III subunit gamma/tau, at 4,529,876 to 4,531,039 _20860 Position (kb) 4528 4529 4530Strain fitness (log2 ratio) -1 0 1at 4527.991 kb on + strand, within PS417_20850at 4527.991 kb on + strand, within PS417_20850at 4527.991 kb on + strand, within PS417_20850at 4527.992 kb on - strand, within PS417_20850at 4527.992 kb on - strand, within PS417_20850at 4528.105 kb on + strand, within PS417_20850at 4528.105 kb on + strand, within PS417_20850at 4528.105 kb on + strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.173 kb on - strand, within PS417_20850at 4528.173 kb on - strand, within PS417_20850at 4528.249 kb on - strand, within PS417_20850at 4528.571 kb on - strand, within PS417_20850at 4528.571 kb on - strand, within PS417_20850at 4528.603 kb on + strand, within PS417_20850at 4528.655 kb on + strand, within PS417_20850at 4528.656 kb on - strand, within PS417_20850at 4528.952 kb on + strandat 4528.971 kb on - strandat 4529.047 kb on + strand, within PS417_20855at 4529.048 kb on - strand, within PS417_20855at 4529.711 kb on - strandat 4529.773 kb on + strandat 4529.774 kb on - strandat 4529.774 kb on - strandat 4529.784 kb on - strandat 4529.932 kb on + strandat 4529.976 kb on + strandat 4530.087 kb on + strand, within PS417_20860at 4530.283 kb on - strand, within PS417_20860at 4530.306 kb on + strand, within PS417_20860at 4530.306 kb on + strand, within PS417_20860at 4530.382 kb on - strand, within PS417_20860at 4530.385 kb on - strand, within PS417_20860

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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4,527,991 + PS417_20850 0.50 -1.7
4,527,991 + PS417_20850 0.50 +0.1
4,527,991 + PS417_20850 0.50 +0.1
4,527,992 - PS417_20850 0.50 -0.5
4,527,992 - PS417_20850 0.50 +0.2
4,528,105 + PS417_20850 0.56 -0.5
4,528,105 + PS417_20850 0.56 -0.4
4,528,105 + PS417_20850 0.56 -0.5
4,528,106 - PS417_20850 0.56 -0.4
4,528,106 - PS417_20850 0.56 +0.5
4,528,106 - PS417_20850 0.56 -1.0
4,528,106 - PS417_20850 0.56 -0.2
4,528,173 - PS417_20850 0.59 -0.5
4,528,173 - PS417_20850 0.59 +0.5
4,528,249 - PS417_20850 0.63 -0.5
4,528,571 - PS417_20850 0.80 +0.0
4,528,571 - PS417_20850 0.80 -0.5
4,528,603 + PS417_20850 0.81 -0.5
4,528,655 + PS417_20850 0.84 -0.5
4,528,656 - PS417_20850 0.84 +1.0
4,528,952 + -0.6
4,528,971 - -0.2
4,529,047 + PS417_20855 0.13 -0.9
4,529,048 - PS417_20855 0.13 -0.5
4,529,711 - -0.0
4,529,773 + -0.7
4,529,774 - -0.2
4,529,774 - -0.3
4,529,784 - +0.6
4,529,932 + -0.5
4,529,976 + +0.1
4,530,087 + PS417_20860 0.18 -0.2
4,530,283 - PS417_20860 0.35 -0.2
4,530,306 + PS417_20860 0.37 -0.3
4,530,306 + PS417_20860 0.37 +0.3
4,530,382 - PS417_20860 0.43 -0.3
4,530,385 - PS417_20860 0.44 +0.4

Or see this region's nucleotide sequence