Strain Fitness in Pseudomonas simiae WCS417 around PS417_15095

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15085 and PS417_15090 are separated by 5 nucleotidesPS417_15090 and PS417_15095 overlap by 4 nucleotidesPS417_15095 and PS417_15100 overlap by 8 nucleotides PS417_15085: PS417_15085 - ATPase AAA, at 3,299,291 to 3,300,250 _15085 PS417_15090: PS417_15090 - hypothetical protein, at 3,300,256 to 3,301,188 _15090 PS417_15095: PS417_15095 - hypothetical protein, at 3,301,185 to 3,301,679 _15095 PS417_15100: PS417_15100 - BatB protein, at 3,301,672 to 3,302,760 _15100 Position (kb) 3301 3302Strain fitness (log2 ratio) -2 -1 0 1at 3300.425 kb on - strand, within PS417_15090at 3301.039 kb on + strand, within PS417_15090at 3301.039 kb on + strand, within PS417_15090at 3301.492 kb on - strand, within PS417_15095at 3301.580 kb on - strand, within PS417_15095at 3301.586 kb on - strand, within PS417_15095at 3301.780 kb on + strandat 3302.108 kb on - strand, within PS417_15100at 3302.350 kb on + strand, within PS417_15100at 3302.473 kb on + strand, within PS417_15100

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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3,300,425 - PS417_15090 0.18 +0.3
3,301,039 + PS417_15090 0.84 -2.3
3,301,039 + PS417_15090 0.84 -0.5
3,301,492 - PS417_15095 0.62 -1.2
3,301,580 - PS417_15095 0.80 +0.5
3,301,586 - PS417_15095 0.81 -0.3
3,301,780 + -0.9
3,302,108 - PS417_15100 0.40 +0.0
3,302,350 + PS417_15100 0.62 -0.0
3,302,473 + PS417_15100 0.74 -0.6

Or see this region's nucleotide sequence