Strain Fitness in Pseudomonas simiae WCS417 around PS417_12765

Experiment: 80% Methanol 2 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_12760 and PS417_12765 are separated by 54 nucleotidesPS417_12765 and PS417_12770 are separated by 11 nucleotidesPS417_12770 and PS417_12775 overlap by 4 nucleotides PS417_12760: PS417_12760 - histidine kinase, at 2,787,284 to 2,789,380 _12760 PS417_12765: PS417_12765 - oxidoreductase, at 2,789,435 to 2,790,181 _12765 PS417_12770: PS417_12770 - hypothetical protein, at 2,790,193 to 2,790,477 _12770 PS417_12775: PS417_12775 - GntR family transcriptional regulator, at 2,790,474 to 2,791,883 _12775 Position (kb) 2789 2790 2791Strain fitness (log2 ratio) -1 0 1at 2788.511 kb on + strand, within PS417_12760at 2788.512 kb on - strand, within PS417_12760at 2788.640 kb on + strand, within PS417_12760at 2788.640 kb on + strand, within PS417_12760at 2788.641 kb on - strand, within PS417_12760at 2788.725 kb on + strand, within PS417_12760at 2789.085 kb on - strand, within PS417_12760at 2789.288 kb on + strandat 2789.289 kb on - strandat 2789.531 kb on + strand, within PS417_12765at 2789.531 kb on + strand, within PS417_12765at 2789.531 kb on + strand, within PS417_12765at 2789.894 kb on + strand, within PS417_12765at 2789.895 kb on - strand, within PS417_12765at 2790.113 kb on - strandat 2790.194 kb on + strandat 2790.195 kb on - strandat 2790.195 kb on - strandat 2790.195 kb on - strandat 2790.202 kb on + strandat 2790.203 kb on - strandat 2790.203 kb on - strandat 2790.203 kb on - strandat 2790.203 kb on - strandat 2790.221 kb on + strandat 2790.367 kb on + strand, within PS417_12770at 2790.368 kb on - strand, within PS417_12770at 2790.492 kb on - strandat 2790.545 kb on - strandat 2790.545 kb on - strandat 2790.682 kb on + strand, within PS417_12775at 2790.817 kb on + strandat 2791.033 kb on + strand, within PS417_12775at 2791.072 kb on - strand, within PS417_12775at 2791.072 kb on - strand, within PS417_12775at 2791.072 kb on - strand, within PS417_12775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
remove
2,788,511 + PS417_12760 0.59 -0.1
2,788,512 - PS417_12760 0.59 +0.1
2,788,640 + PS417_12760 0.65 +0.0
2,788,640 + PS417_12760 0.65 -1.3
2,788,641 - PS417_12760 0.65 -0.4
2,788,725 + PS417_12760 0.69 +0.4
2,789,085 - PS417_12760 0.86 -0.6
2,789,288 + +1.0
2,789,289 - -0.4
2,789,531 + PS417_12765 0.13 -0.5
2,789,531 + PS417_12765 0.13 -0.2
2,789,531 + PS417_12765 0.13 -0.8
2,789,894 + PS417_12765 0.61 -1.5
2,789,895 - PS417_12765 0.62 -0.1
2,790,113 - +0.8
2,790,194 + +1.3
2,790,195 - +0.6
2,790,195 - +1.1
2,790,195 - +1.4
2,790,202 + -0.3
2,790,203 - -0.6
2,790,203 - -0.7
2,790,203 - +0.1
2,790,203 - -0.9
2,790,221 + -0.2
2,790,367 + PS417_12770 0.61 +0.2
2,790,368 - PS417_12770 0.61 -0.0
2,790,492 - -1.3
2,790,545 - -0.1
2,790,545 - +0.4
2,790,682 + PS417_12775 0.15 +0.4
2,790,817 + -0.6
2,791,033 + PS417_12775 0.40 -0.5
2,791,072 - PS417_12775 0.42 -0.1
2,791,072 - PS417_12775 0.42 +1.5
2,791,072 - PS417_12775 0.42 -0.4

Or see this region's nucleotide sequence