Strain Fitness in Pseudomonas simiae WCS417 around PS417_09590

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09585 and PS417_09590 are separated by 85 nucleotidesPS417_09590 and PS417_09595 overlap by 1 nucleotides PS417_09585: PS417_09585 - acetyltransferase, at 2,075,137 to 2,076,183 _09585 PS417_09590: PS417_09590 - membrane protein, at 2,076,269 to 2,077,678 _09590 PS417_09595: PS417_09595 - membrane protein, at 2,077,678 to 2,079,105 _09595 Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -2 -1 0 1 2at 2075.363 kb on + strand, within PS417_09585at 2075.363 kb on + strand, within PS417_09585at 2075.364 kb on - strand, within PS417_09585at 2075.364 kb on - strand, within PS417_09585at 2075.364 kb on - strand, within PS417_09585at 2075.427 kb on - strand, within PS417_09585at 2075.428 kb on + strand, within PS417_09585at 2075.429 kb on - strand, within PS417_09585at 2075.609 kb on + strand, within PS417_09585at 2075.610 kb on - strandat 2075.610 kb on - strand, within PS417_09585at 2075.610 kb on - strandat 2075.610 kb on - strand, within PS417_09585at 2075.939 kb on + strand, within PS417_09585at 2075.939 kb on + strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2076.219 kb on + strandat 2077.002 kb on - strand, within PS417_09590at 2077.182 kb on + strand, within PS417_09590at 2077.183 kb on - strand, within PS417_09590at 2077.208 kb on + strand, within PS417_09590at 2077.261 kb on + strand, within PS417_09590at 2077.261 kb on + strand, within PS417_09590at 2077.262 kb on - strand, within PS417_09590at 2077.483 kb on - strand, within PS417_09590at 2077.715 kb on - strandat 2077.826 kb on + strand, within PS417_09595at 2077.827 kb on - strand, within PS417_09595at 2077.827 kb on - strand, within PS417_09595at 2077.994 kb on + strand, within PS417_09595at 2077.994 kb on + strand, within PS417_09595at 2077.995 kb on - strand, within PS417_09595at 2077.995 kb on - strand, within PS417_09595at 2078.000 kb on + strand, within PS417_09595at 2078.000 kb on + strand, within PS417_09595at 2078.001 kb on - strandat 2078.187 kb on - strand, within PS417_09595at 2078.244 kb on - strand, within PS417_09595

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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2,075,363 + PS417_09585 0.22 -1.9
2,075,363 + PS417_09585 0.22 -0.5
2,075,364 - PS417_09585 0.22 -0.7
2,075,364 - PS417_09585 0.22 -0.1
2,075,364 - PS417_09585 0.22 -0.5
2,075,427 - PS417_09585 0.28 +0.2
2,075,428 + PS417_09585 0.28 -0.4
2,075,429 - PS417_09585 0.28 -0.4
2,075,609 + PS417_09585 0.45 -0.2
2,075,610 - +1.2
2,075,610 - PS417_09585 0.45 -2.1
2,075,610 - +1.2
2,075,610 - PS417_09585 0.45 +0.5
2,075,939 + PS417_09585 0.77 -0.6
2,075,939 + PS417_09585 0.77 -1.2
2,075,944 - PS417_09585 0.77 +0.3
2,075,944 - PS417_09585 0.77 -2.0
2,075,944 - PS417_09585 0.77 -0.5
2,075,944 - PS417_09585 0.77 +0.0
2,076,219 + +0.0
2,077,002 - PS417_09590 0.52 -1.5
2,077,182 + PS417_09590 0.65 -0.9
2,077,183 - PS417_09590 0.65 -1.3
2,077,208 + PS417_09590 0.67 -1.1
2,077,261 + PS417_09590 0.70 +1.1
2,077,261 + PS417_09590 0.70 -0.2
2,077,262 - PS417_09590 0.70 +1.8
2,077,483 - PS417_09590 0.86 -1.1
2,077,715 - -0.1
2,077,826 + PS417_09595 0.10 -2.1
2,077,827 - PS417_09595 0.10 +0.0
2,077,827 - PS417_09595 0.10 -0.1
2,077,994 + PS417_09595 0.22 -0.4
2,077,994 + PS417_09595 0.22 -1.6
2,077,995 - PS417_09595 0.22 -0.3
2,077,995 - PS417_09595 0.22 -1.0
2,078,000 + PS417_09595 0.23 +0.9
2,078,000 + PS417_09595 0.23 +0.8
2,078,001 - -0.8
2,078,187 - PS417_09595 0.36 -0.9
2,078,244 - PS417_09595 0.40 -0.6

Or see this region's nucleotide sequence