Strain Fitness in Pseudomonas simiae WCS417 around PS417_09585

Experiment: 80% Methanol 2 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_09575 and PS417_09580 are separated by 164 nucleotidesPS417_09580 and PS417_09585 are separated by 26 nucleotidesPS417_09585 and PS417_09590 are separated by 85 nucleotides PS417_09575: PS417_09575 - glutathione S-transferase, at 2,073,738 to 2,074,370 _09575 PS417_09580: PS417_09580 - tyrosyl-trna synthetase, at 2,074,535 to 2,075,110 _09580 PS417_09585: PS417_09585 - acetyltransferase, at 2,075,137 to 2,076,183 _09585 PS417_09590: PS417_09590 - membrane protein, at 2,076,269 to 2,077,678 _09590 Position (kb) 2075 2076 2077Strain fitness (log2 ratio) -2 -1 0 1at 2074.334 kb on - strandat 2074.519 kb on + strandat 2074.603 kb on + strand, within PS417_09580at 2074.751 kb on + strand, within PS417_09580at 2074.751 kb on + strand, within PS417_09580at 2074.817 kb on - strand, within PS417_09580at 2075.363 kb on + strand, within PS417_09585at 2075.363 kb on + strand, within PS417_09585at 2075.364 kb on - strand, within PS417_09585at 2075.364 kb on - strand, within PS417_09585at 2075.364 kb on - strand, within PS417_09585at 2075.427 kb on - strand, within PS417_09585at 2075.428 kb on + strand, within PS417_09585at 2075.429 kb on - strand, within PS417_09585at 2075.609 kb on + strand, within PS417_09585at 2075.610 kb on - strandat 2075.610 kb on - strand, within PS417_09585at 2075.610 kb on - strandat 2075.610 kb on - strand, within PS417_09585at 2075.939 kb on + strand, within PS417_09585at 2075.939 kb on + strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2075.944 kb on - strand, within PS417_09585at 2076.219 kb on + strandat 2077.002 kb on - strand, within PS417_09590at 2077.182 kb on + strand, within PS417_09590at 2077.183 kb on - strand, within PS417_09590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
remove
2,074,334 - -0.5
2,074,519 + +0.1
2,074,603 + PS417_09580 0.12 +0.3
2,074,751 + PS417_09580 0.38 -0.7
2,074,751 + PS417_09580 0.38 +1.7
2,074,817 - PS417_09580 0.49 -0.6
2,075,363 + PS417_09585 0.22 -1.9
2,075,363 + PS417_09585 0.22 -0.5
2,075,364 - PS417_09585 0.22 -0.7
2,075,364 - PS417_09585 0.22 -0.1
2,075,364 - PS417_09585 0.22 -0.5
2,075,427 - PS417_09585 0.28 +0.2
2,075,428 + PS417_09585 0.28 -0.4
2,075,429 - PS417_09585 0.28 -0.4
2,075,609 + PS417_09585 0.45 -0.2
2,075,610 - +1.2
2,075,610 - PS417_09585 0.45 -2.1
2,075,610 - +1.2
2,075,610 - PS417_09585 0.45 +0.5
2,075,939 + PS417_09585 0.77 -0.6
2,075,939 + PS417_09585 0.77 -1.2
2,075,944 - PS417_09585 0.77 +0.3
2,075,944 - PS417_09585 0.77 -2.0
2,075,944 - PS417_09585 0.77 -0.5
2,075,944 - PS417_09585 0.77 +0.0
2,076,219 + +0.0
2,077,002 - PS417_09590 0.52 -1.5
2,077,182 + PS417_09590 0.65 -0.9
2,077,183 - PS417_09590 0.65 -1.3

Or see this region's nucleotide sequence