Experiment: 80% Methanol 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09240 and PS417_09245 are separated by 172 nucleotides PS417_09245 and PS417_09250 are separated by 159 nucleotides PS417_09250 and PS417_09255 are separated by 19 nucleotides PS417_09255 and PS417_09260 are separated by 396 nucleotides PS417_09260 and PS417_09265 are separated by 19 nucleotides
PS417_09240: PS417_09240 - sodium transporter, at 2,007,209 to 2,008,174
_09240
PS417_09245: PS417_09245 - recombinase RdgC, at 2,008,347 to 2,009,267
_09245
PS417_09250: PS417_09250 - tRNA-Val, at 2,009,427 to 2,009,502
_09250
PS417_09255: PS417_09255 - tRNA-Asp, at 2,009,522 to 2,009,598
_09255
PS417_09260: PS417_09260 - tRNA-Val, at 2,009,995 to 2,010,070
_09260
PS417_09265: PS417_09265 - tRNA-Asp, at 2,010,090 to 2,010,166
_09265
Position (kb)
2008
2009
2010 Strain fitness (log2 ratio)
-1
0
1 at 2008.135 kb on + strand at 2008.135 kb on + strand at 2008.136 kb on - strand at 2008.284 kb on - strand at 2008.348 kb on + strand at 2008.348 kb on + strand at 2008.970 kb on - strand at 2009.049 kb on - strand, within PS417_09245 at 2009.049 kb on - strand, within PS417_09245 at 2009.144 kb on - strand, within PS417_09245 at 2009.247 kb on - strand at 2009.247 kb on - strand at 2009.287 kb on + strand at 2009.288 kb on - strand at 2009.389 kb on - strand at 2009.389 kb on - strand at 2009.402 kb on - strand at 2009.742 kb on + strand at 2009.742 kb on + strand at 2009.759 kb on - strand at 2009.789 kb on - strand at 2009.823 kb on + strand at 2009.823 kb on + strand at 2009.823 kb on + strand at 2009.824 kb on - strand at 2009.879 kb on + strand at 2009.880 kb on - strand at 2009.880 kb on - strand at 2010.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress remove 2,008,135 + +0.8 2,008,135 + -0.1 2,008,136 - +1.2 2,008,284 - +0.1 2,008,348 + -0.0 2,008,348 + +0.5 2,008,970 - -0.6 2,009,049 - PS417_09245 0.76 -1.0 2,009,049 - PS417_09245 0.76 -1.4 2,009,144 - PS417_09245 0.87 +0.7 2,009,247 - -1.2 2,009,247 - -0.2 2,009,287 + +0.3 2,009,288 - +0.2 2,009,389 - -0.5 2,009,389 - +0.7 2,009,402 - +0.5 2,009,742 + -0.1 2,009,742 + +0.8 2,009,759 - -1.6 2,009,789 - -0.9 2,009,823 + -0.2 2,009,823 + +0.1 2,009,823 + +0.7 2,009,824 - -0.8 2,009,879 + -0.6 2,009,880 - -0.7 2,009,880 - +1.6 2,010,248 - +0.1
Or see this region's nucleotide sequence