Strain Fitness in Pseudomonas simiae WCS417 around PS417_09245

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09240 and PS417_09245 are separated by 172 nucleotidesPS417_09245 and PS417_09250 are separated by 159 nucleotidesPS417_09250 and PS417_09255 are separated by 19 nucleotidesPS417_09255 and PS417_09260 are separated by 396 nucleotidesPS417_09260 and PS417_09265 are separated by 19 nucleotides PS417_09240: PS417_09240 - sodium transporter, at 2,007,209 to 2,008,174 _09240 PS417_09245: PS417_09245 - recombinase RdgC, at 2,008,347 to 2,009,267 _09245 PS417_09250: PS417_09250 - tRNA-Val, at 2,009,427 to 2,009,502 _09250 PS417_09255: PS417_09255 - tRNA-Asp, at 2,009,522 to 2,009,598 _09255 PS417_09260: PS417_09260 - tRNA-Val, at 2,009,995 to 2,010,070 _09260 PS417_09265: PS417_09265 - tRNA-Asp, at 2,010,090 to 2,010,166 _09265 Position (kb) 2008 2009 2010Strain fitness (log2 ratio) -1 0 1at 2008.135 kb on + strandat 2008.135 kb on + strandat 2008.136 kb on - strandat 2008.284 kb on - strandat 2008.348 kb on + strandat 2008.348 kb on + strandat 2008.970 kb on - strandat 2009.049 kb on - strand, within PS417_09245at 2009.049 kb on - strand, within PS417_09245at 2009.144 kb on - strand, within PS417_09245at 2009.247 kb on - strandat 2009.247 kb on - strandat 2009.287 kb on + strandat 2009.288 kb on - strandat 2009.389 kb on - strandat 2009.389 kb on - strandat 2009.402 kb on - strandat 2009.742 kb on + strandat 2009.742 kb on + strandat 2009.759 kb on - strandat 2009.789 kb on - strandat 2009.823 kb on + strandat 2009.823 kb on + strandat 2009.823 kb on + strandat 2009.824 kb on - strandat 2009.879 kb on + strandat 2009.880 kb on - strandat 2009.880 kb on - strandat 2010.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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2,008,135 + +0.8
2,008,135 + -0.1
2,008,136 - +1.2
2,008,284 - +0.1
2,008,348 + -0.0
2,008,348 + +0.5
2,008,970 - -0.6
2,009,049 - PS417_09245 0.76 -1.0
2,009,049 - PS417_09245 0.76 -1.4
2,009,144 - PS417_09245 0.87 +0.7
2,009,247 - -1.2
2,009,247 - -0.2
2,009,287 + +0.3
2,009,288 - +0.2
2,009,389 - -0.5
2,009,389 - +0.7
2,009,402 - +0.5
2,009,742 + -0.1
2,009,742 + +0.8
2,009,759 - -1.6
2,009,789 - -0.9
2,009,823 + -0.2
2,009,823 + +0.1
2,009,823 + +0.7
2,009,824 - -0.8
2,009,879 + -0.6
2,009,880 - -0.7
2,009,880 - +1.6
2,010,248 - +0.1

Or see this region's nucleotide sequence