Strain Fitness in Pseudomonas simiae WCS417 around PS417_06395

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06390 and PS417_06395 are separated by 57 nucleotidesPS417_06395 and PS417_06400 are separated by 13 nucleotides PS417_06390: PS417_06390 - DEAD/DEAH box helicase, at 1,415,550 to 1,418,030 _06390 PS417_06395: PS417_06395 - amino acid transporter, at 1,418,088 to 1,418,852 _06395 PS417_06400: PS417_06400 - succinylglutamate desuccinylase, at 1,418,866 to 1,419,984 _06400 Position (kb) 1418 1419Strain fitness (log2 ratio) -1 0 1at 1417.233 kb on - strand, within PS417_06390at 1417.233 kb on - strand, within PS417_06390at 1417.239 kb on - strand, within PS417_06390at 1417.279 kb on - strand, within PS417_06390at 1417.350 kb on - strand, within PS417_06390at 1417.367 kb on + strand, within PS417_06390at 1417.888 kb on + strandat 1417.888 kb on + strandat 1417.889 kb on - strandat 1417.889 kb on - strandat 1417.954 kb on - strandat 1418.459 kb on - strand, within PS417_06395at 1418.543 kb on + strand, within PS417_06395at 1418.543 kb on + strand, within PS417_06395at 1418.544 kb on - strand, within PS417_06395at 1418.848 kb on + strandat 1418.848 kb on + strandat 1418.848 kb on + strandat 1418.848 kb on + strandat 1418.878 kb on + strandat 1418.879 kb on - strandat 1419.054 kb on - strand, within PS417_06400at 1419.076 kb on + strand, within PS417_06400at 1419.194 kb on + strand, within PS417_06400at 1419.404 kb on + strand, within PS417_06400at 1419.404 kb on + strand, within PS417_06400at 1419.405 kb on - strand, within PS417_06400at 1419.707 kb on + strand, within PS417_06400

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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1,417,233 - PS417_06390 0.68 -1.0
1,417,233 - PS417_06390 0.68 -0.6
1,417,239 - PS417_06390 0.68 +1.5
1,417,279 - PS417_06390 0.70 -0.5
1,417,350 - PS417_06390 0.73 +0.6
1,417,367 + PS417_06390 0.73 +0.1
1,417,888 + -0.4
1,417,888 + -1.1
1,417,889 - +0.1
1,417,889 - -0.7
1,417,954 - +0.2
1,418,459 - PS417_06395 0.48 +1.3
1,418,543 + PS417_06395 0.59 +1.0
1,418,543 + PS417_06395 0.59 -0.6
1,418,544 - PS417_06395 0.60 +0.2
1,418,848 + -0.5
1,418,848 + +0.0
1,418,848 + +0.2
1,418,848 + +0.0
1,418,878 + -0.3
1,418,879 - -0.3
1,419,054 - PS417_06400 0.17 -0.6
1,419,076 + PS417_06400 0.19 -1.0
1,419,194 + PS417_06400 0.29 -0.2
1,419,404 + PS417_06400 0.48 -0.8
1,419,404 + PS417_06400 0.48 +0.3
1,419,405 - PS417_06400 0.48 -0.1
1,419,707 + PS417_06400 0.75 +0.0

Or see this region's nucleotide sequence