Strain Fitness in Pseudomonas simiae WCS417 around PS417_06030

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06025 and PS417_06030 overlap by 4 nucleotidesPS417_06030 and PS417_06035 are separated by 168 nucleotidesPS417_06035 and PS417_06040 are separated by 186 nucleotidesPS417_06040 and PS417_06045 are separated by 29 nucleotides PS417_06025: PS417_06025 - alpha/beta hydrolase, at 1,339,405 to 1,340,310 _06025 PS417_06030: PS417_06030 - hypothetical protein, at 1,340,307 to 1,340,633 _06030 PS417_06035: PS417_06035 - hypothetical protein, at 1,340,802 to 1,341,146 _06035 PS417_06040: PS417_06040 - hypothetical protein, at 1,341,333 to 1,341,527 _06040 PS417_06045: PS417_06045 - membrane protein, at 1,341,557 to 1,342,342 _06045 Position (kb) 1340 1341Strain fitness (log2 ratio) -2 -1 0 1at 1339.309 kb on + strandat 1339.309 kb on + strandat 1339.309 kb on + strandat 1339.309 kb on + strandat 1339.309 kb on + strandat 1339.309 kb on + strandat 1339.309 kb on + strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.310 kb on - strandat 1339.385 kb on + strandat 1339.386 kb on - strandat 1339.389 kb on - strandat 1339.433 kb on + strandat 1339.516 kb on + strand, within PS417_06025at 1339.711 kb on + strand, within PS417_06025at 1339.751 kb on - strand, within PS417_06025at 1339.859 kb on - strand, within PS417_06025at 1339.859 kb on - strand, within PS417_06025at 1339.938 kb on - strand, within PS417_06025at 1339.938 kb on - strand, within PS417_06025at 1340.269 kb on + strandat 1340.270 kb on - strandat 1340.280 kb on + strandat 1340.389 kb on - strand, within PS417_06030at 1340.389 kb on - strand, within PS417_06030at 1340.394 kb on + strand, within PS417_06030at 1340.473 kb on - strand, within PS417_06030at 1340.473 kb on - strand, within PS417_06030at 1340.687 kb on + strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.800 kb on - strandat 1340.802 kb on - strandat 1340.810 kb on + strandat 1340.915 kb on + strand, within PS417_06035at 1340.927 kb on + strand, within PS417_06035at 1341.201 kb on - strandat 1341.201 kb on - strandat 1341.288 kb on + strandat 1341.289 kb on - strandat 1341.289 kb on - strandat 1341.300 kb on - strandat 1341.314 kb on + strandat 1341.314 kb on + strandat 1341.318 kb on + strandat 1341.318 kb on + strandat 1341.319 kb on - strandat 1341.340 kb on + strandat 1341.388 kb on + strand, within PS417_06040at 1341.388 kb on + strand, within PS417_06040at 1341.389 kb on - strand, within PS417_06040at 1341.417 kb on + strand, within PS417_06040at 1341.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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1,339,309 + -1.6
1,339,309 + +0.5
1,339,309 + -0.4
1,339,309 + -0.3
1,339,309 + +0.6
1,339,309 + -0.3
1,339,309 + -0.4
1,339,310 - +0.1
1,339,310 - -0.4
1,339,310 - -0.2
1,339,310 - -0.3
1,339,310 - +0.0
1,339,310 - +0.8
1,339,310 - -0.3
1,339,310 - +1.5
1,339,310 - -0.3
1,339,385 + +0.5
1,339,386 - +0.3
1,339,389 - +1.0
1,339,433 + -0.8
1,339,516 + PS417_06025 0.12 +1.0
1,339,711 + PS417_06025 0.34 -0.5
1,339,751 - PS417_06025 0.38 +0.5
1,339,859 - PS417_06025 0.50 -1.2
1,339,859 - PS417_06025 0.50 +0.1
1,339,938 - PS417_06025 0.59 -0.1
1,339,938 - PS417_06025 0.59 +0.9
1,340,269 + -0.4
1,340,270 - -0.1
1,340,280 + -0.4
1,340,389 - PS417_06030 0.25 +0.5
1,340,389 - PS417_06030 0.25 -0.6
1,340,394 + PS417_06030 0.27 -1.4
1,340,473 - PS417_06030 0.51 -0.3
1,340,473 - PS417_06030 0.51 -0.4
1,340,687 + -0.4
1,340,800 - -0.8
1,340,800 - -0.4
1,340,800 - -0.2
1,340,800 - -1.1
1,340,800 - +0.5
1,340,802 - -2.6
1,340,810 + +0.6
1,340,915 + PS417_06035 0.33 +1.2
1,340,927 + PS417_06035 0.36 +0.4
1,341,201 - -0.4
1,341,201 - +0.9
1,341,288 + +0.5
1,341,289 - -0.6
1,341,289 - +0.5
1,341,300 - -0.9
1,341,314 + +0.5
1,341,314 + -0.2
1,341,318 + -0.8
1,341,318 + -1.5
1,341,319 - -0.3
1,341,340 + +0.5
1,341,388 + PS417_06040 0.28 -0.7
1,341,388 + PS417_06040 0.28 +0.5
1,341,389 - PS417_06040 0.29 -0.4
1,341,417 + PS417_06040 0.43 -0.0
1,341,526 - -0.0

Or see this region's nucleotide sequence