Strain Fitness in Pseudomonas simiae WCS417 around PS417_09405

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09390 and PS417_09395 overlap by 4 nucleotidesPS417_09395 and PS417_09400 overlap by 4 nucleotidesPS417_09400 and PS417_09405 overlap by 4 nucleotidesPS417_09405 and PS417_09410 are separated by 290 nucleotides PS417_09390: PS417_09390 - hypothetical protein, at 2,036,082 to 2,036,642 _09390 PS417_09395: PS417_09395 - hypothetical protein, at 2,036,639 to 2,036,968 _09395 PS417_09400: PS417_09400 - thiamine pyrophosphate-binding protein, at 2,036,965 to 2,037,501 _09400 PS417_09405: PS417_09405 - peptidase, at 2,037,498 to 2,038,700 _09405 PS417_09410: PS417_09410 - isopropylmalate isomerase, at 2,038,991 to 2,040,409 _09410 Position (kb) 2037 2038 2039Strain fitness (log2 ratio) -1 0 1 2at 2036.591 kb on - strandat 2036.909 kb on - strand, within PS417_09395at 2038.088 kb on + strand, within PS417_09405at 2038.513 kb on + strand, within PS417_09405at 2038.786 kb on - strandat 2038.786 kb on - strandat 2038.786 kb on - strandat 2038.786 kb on - strandat 2038.786 kb on - strandat 2038.864 kb on + strandat 2038.937 kb on + strandat 2039.009 kb on + strandat 2039.072 kb on + strandat 2039.072 kb on + strandat 2039.072 kb on + strandat 2039.072 kb on + strandat 2039.072 kb on + strandat 2039.073 kb on - strandat 2039.073 kb on - strandat 2039.074 kb on + strandat 2039.075 kb on - strandat 2039.075 kb on - strandat 2039.075 kb on - strandat 2039.075 kb on - strandat 2039.075 kb on - strandat 2039.076 kb on + strandat 2039.077 kb on - strandat 2039.077 kb on - strandat 2039.100 kb on - strandat 2039.148 kb on + strand, within PS417_09410at 2039.253 kb on - strand, within PS417_09410at 2039.400 kb on - strand, within PS417_09410at 2039.400 kb on - strand, within PS417_09410

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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2,036,591 - -0.3
2,036,909 - PS417_09395 0.82 -0.4
2,038,088 + PS417_09405 0.49 -1.4
2,038,513 + PS417_09405 0.84 -0.9
2,038,786 - +0.4
2,038,786 - -0.3
2,038,786 - -1.2
2,038,786 - -0.3
2,038,786 - -0.2
2,038,864 + -0.8
2,038,937 + +0.2
2,039,009 + +0.2
2,039,072 + -0.0
2,039,072 + -0.2
2,039,072 + +0.2
2,039,072 + +0.6
2,039,072 + -0.5
2,039,073 - -0.3
2,039,073 - -0.1
2,039,074 + +0.3
2,039,075 - -0.1
2,039,075 - -0.2
2,039,075 - -0.5
2,039,075 - -0.8
2,039,075 - +0.9
2,039,076 + -0.5
2,039,077 - +0.4
2,039,077 - -0.4
2,039,100 - +2.4
2,039,148 + PS417_09410 0.11 -0.4
2,039,253 - PS417_09410 0.18 +0.0
2,039,400 - PS417_09410 0.29 -0.1
2,039,400 - PS417_09410 0.29 -1.3

Or see this region's nucleotide sequence