Experiment: Fraxetin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09390 and PS417_09395 overlap by 4 nucleotides PS417_09395 and PS417_09400 overlap by 4 nucleotides PS417_09400 and PS417_09405 overlap by 4 nucleotides PS417_09405 and PS417_09410 are separated by 290 nucleotides
PS417_09390: PS417_09390 - hypothetical protein, at 2,036,082 to 2,036,642
_09390
PS417_09395: PS417_09395 - hypothetical protein, at 2,036,639 to 2,036,968
_09395
PS417_09400: PS417_09400 - thiamine pyrophosphate-binding protein, at 2,036,965 to 2,037,501
_09400
PS417_09405: PS417_09405 - peptidase, at 2,037,498 to 2,038,700
_09405
PS417_09410: PS417_09410 - isopropylmalate isomerase, at 2,038,991 to 2,040,409
_09410
Position (kb)
2037
2038
2039 Strain fitness (log2 ratio)
-1
0
1
2 at 2036.591 kb on - strand at 2036.909 kb on - strand, within PS417_09395 at 2038.088 kb on + strand, within PS417_09405 at 2038.513 kb on + strand, within PS417_09405 at 2038.786 kb on - strand at 2038.786 kb on - strand at 2038.786 kb on - strand at 2038.786 kb on - strand at 2038.786 kb on - strand at 2038.864 kb on + strand at 2038.937 kb on + strand at 2039.009 kb on + strand at 2039.072 kb on + strand at 2039.072 kb on + strand at 2039.072 kb on + strand at 2039.072 kb on + strand at 2039.072 kb on + strand at 2039.073 kb on - strand at 2039.073 kb on - strand at 2039.074 kb on + strand at 2039.075 kb on - strand at 2039.075 kb on - strand at 2039.075 kb on - strand at 2039.075 kb on - strand at 2039.075 kb on - strand at 2039.076 kb on + strand at 2039.077 kb on - strand at 2039.077 kb on - strand at 2039.100 kb on - strand at 2039.148 kb on + strand, within PS417_09410 at 2039.253 kb on - strand, within PS417_09410 at 2039.400 kb on - strand, within PS417_09410 at 2039.400 kb on - strand, within PS417_09410
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress remove 2,036,591 - -0.3 2,036,909 - PS417_09395 0.82 -0.4 2,038,088 + PS417_09405 0.49 -1.4 2,038,513 + PS417_09405 0.84 -0.9 2,038,786 - +0.4 2,038,786 - -0.3 2,038,786 - -1.2 2,038,786 - -0.3 2,038,786 - -0.2 2,038,864 + -0.8 2,038,937 + +0.2 2,039,009 + +0.2 2,039,072 + -0.0 2,039,072 + -0.2 2,039,072 + +0.2 2,039,072 + +0.6 2,039,072 + -0.5 2,039,073 - -0.3 2,039,073 - -0.1 2,039,074 + +0.3 2,039,075 - -0.1 2,039,075 - -0.2 2,039,075 - -0.5 2,039,075 - -0.8 2,039,075 - +0.9 2,039,076 + -0.5 2,039,077 - +0.4 2,039,077 - -0.4 2,039,100 - +2.4 2,039,148 + PS417_09410 0.11 -0.4 2,039,253 - PS417_09410 0.18 +0.0 2,039,400 - PS417_09410 0.29 -0.1 2,039,400 - PS417_09410 0.29 -1.3
Or see this region's nucleotide sequence