Experiment: Scopoletin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02450 and PS417_02455 are separated by 194 nucleotides PS417_02455 and PS417_02460 overlap by 4 nucleotides PS417_02460 and PS417_02465 are separated by 63 nucleotides PS417_02465 and PS417_02470 overlap by 13 nucleotides
PS417_02450: PS417_02450 - oligoribonuclease, at 561,268 to 561,810
_02450
PS417_02455: PS417_02455 - putative transporter, required for glycine utilization <small>(from data)</small>, at 562,005 to 562,619
_02455
PS417_02460: PS417_02460 - epoxyqueuosine reductase, at 562,616 to 563,680
_02460
PS417_02465: PS417_02465 - carbohydrate kinase, at 563,744 to 564,604
_02465
PS417_02470: PS417_02470 - ATPase, at 564,592 to 565,062
_02470
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 562.020 kb on + strand at 562.020 kb on + strand at 562.447 kb on - strand, within PS417_02455 at 562.480 kb on - strand, within PS417_02455 at 562.480 kb on - strand, within PS417_02455 at 562.482 kb on - strand, within PS417_02455 at 562.482 kb on - strand, within PS417_02455 at 562.494 kb on + strand, within PS417_02455 at 562.600 kb on - strand at 562.618 kb on - strand at 562.828 kb on + strand, within PS417_02460 at 562.828 kb on + strand, within PS417_02460 at 562.829 kb on - strand, within PS417_02460 at 562.829 kb on - strand, within PS417_02460 at 562.829 kb on - strand, within PS417_02460 at 563.041 kb on - strand, within PS417_02460 at 563.167 kb on - strand, within PS417_02460 at 563.190 kb on - strand, within PS417_02460 at 563.379 kb on + strand, within PS417_02460 at 563.380 kb on - strand, within PS417_02460 at 563.402 kb on + strand, within PS417_02460 at 563.434 kb on - strand, within PS417_02460 at 563.434 kb on - strand, within PS417_02460 at 563.517 kb on + strand, within PS417_02460 at 563.518 kb on - strand, within PS417_02460 at 563.518 kb on - strand, within PS417_02460 at 563.518 kb on - strand, within PS417_02460 at 563.713 kb on - strand at 563.775 kb on + strand at 563.776 kb on - strand at 563.776 kb on - strand at 563.776 kb on - strand at 563.776 kb on - strand at 563.776 kb on - strand at 563.776 kb on - strand at 563.862 kb on + strand, within PS417_02465 at 563.862 kb on + strand, within PS417_02465 at 563.862 kb on + strand, within PS417_02465 at 563.862 kb on + strand, within PS417_02465 at 563.863 kb on - strand, within PS417_02465 at 564.275 kb on - strand, within PS417_02465 at 564.465 kb on - strand, within PS417_02465 at 564.555 kb on + strand at 564.602 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress remove 562,020 + -0.0 562,020 + +0.3 562,447 - PS417_02455 0.72 -1.7 562,480 - PS417_02455 0.77 -0.3 562,480 - PS417_02455 0.77 +0.4 562,482 - PS417_02455 0.78 +0.1 562,482 - PS417_02455 0.78 -1.3 562,494 + PS417_02455 0.80 -0.6 562,600 - -3.0 562,618 - +1.5 562,828 + PS417_02460 0.20 -0.2 562,828 + PS417_02460 0.20 -0.7 562,829 - PS417_02460 0.20 -0.8 562,829 - PS417_02460 0.20 -0.5 562,829 - PS417_02460 0.20 -0.5 563,041 - PS417_02460 0.40 -0.3 563,167 - PS417_02460 0.52 -0.3 563,190 - PS417_02460 0.54 -0.4 563,379 + PS417_02460 0.72 -0.3 563,380 - PS417_02460 0.72 -1.7 563,402 + PS417_02460 0.74 -0.3 563,434 - PS417_02460 0.77 -0.5 563,434 - PS417_02460 0.77 +1.0 563,517 + PS417_02460 0.85 -1.4 563,518 - PS417_02460 0.85 -0.5 563,518 - PS417_02460 0.85 -0.7 563,518 - PS417_02460 0.85 -1.4 563,713 - -0.2 563,775 + +1.3 563,776 - +0.0 563,776 - -0.0 563,776 - -0.2 563,776 - +0.5 563,776 - +1.3 563,776 - -0.9 563,862 + PS417_02465 0.14 +0.3 563,862 + PS417_02465 0.14 -0.2 563,862 + PS417_02465 0.14 -0.2 563,862 + PS417_02465 0.14 +0.2 563,863 - PS417_02465 0.14 +0.0 564,275 - PS417_02465 0.62 -0.4 564,465 - PS417_02465 0.84 -0.4 564,555 + +0.2 564,602 + -0.8
Or see this region's nucleotide sequence