Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11830 and PS417_11835 are separated by 117 nucleotides PS417_11835 and PS417_11840 are separated by 92 nucleotides
PS417_11830: PS417_11830 - membrane protein, at 2,574,028 to 2,574,933
_11830
PS417_11835: PS417_11835 - MFS transporter, at 2,575,051 to 2,576,262
_11835
PS417_11840: PS417_11840 - GntR family transcriptional regulator, at 2,576,355 to 2,577,767
_11840
Position (kb)
2575
2576
2577 Strain fitness (log2 ratio)
-1
0
1 at 2574.325 kb on + strand, within PS417_11830 at 2574.526 kb on + strand, within PS417_11830 at 2574.526 kb on + strand, within PS417_11830 at 2574.656 kb on - strand, within PS417_11830 at 2574.727 kb on + strand, within PS417_11830 at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2574.905 kb on - strand at 2575.071 kb on + strand at 2575.299 kb on + strand, within PS417_11835 at 2575.321 kb on + strand, within PS417_11835 at 2575.515 kb on - strand, within PS417_11835 at 2575.570 kb on - strand, within PS417_11835 at 2575.589 kb on + strand, within PS417_11835 at 2575.718 kb on + strand, within PS417_11835 at 2575.719 kb on - strand, within PS417_11835 at 2575.887 kb on - strand, within PS417_11835 at 2576.009 kb on + strand, within PS417_11835 at 2576.010 kb on - strand, within PS417_11835 at 2576.010 kb on - strand, within PS417_11835 at 2576.102 kb on + strand, within PS417_11835 at 2576.102 kb on + strand, within PS417_11835 at 2576.103 kb on - strand, within PS417_11835 at 2576.299 kb on - strand at 2576.304 kb on + strand at 2576.305 kb on - strand at 2576.574 kb on + strand, within PS417_11840 at 2576.575 kb on - strand, within PS417_11840 at 2576.578 kb on + strand at 2576.578 kb on + strand, within PS417_11840 at 2576.579 kb on - strand, within PS417_11840 at 2576.659 kb on + strand, within PS417_11840 at 2576.659 kb on + strand, within PS417_11840 at 2576.659 kb on + strand, within PS417_11840 at 2576.659 kb on + strand, within PS417_11840 at 2576.660 kb on - strand, within PS417_11840 at 2576.865 kb on + strand, within PS417_11840 at 2576.866 kb on - strand, within PS417_11840 at 2576.960 kb on - strand, within PS417_11840 at 2577.001 kb on - strand, within PS417_11840 at 2577.050 kb on + strand, within PS417_11840 at 2577.112 kb on - strand, within PS417_11840 at 2577.234 kb on + strand, within PS417_11840 at 2577.234 kb on + strand, within PS417_11840 at 2577.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 2,574,325 + PS417_11830 0.33 +0.2 2,574,526 + PS417_11830 0.55 -0.1 2,574,526 + PS417_11830 0.55 -0.0 2,574,656 - PS417_11830 0.69 +0.8 2,574,727 + PS417_11830 0.77 +0.7 2,574,905 - -0.5 2,574,905 - +0.0 2,574,905 - -1.2 2,574,905 - -0.3 2,574,905 - -0.1 2,574,905 - +0.4 2,574,905 - -0.1 2,575,071 + +0.1 2,575,299 + PS417_11835 0.20 +0.3 2,575,321 + PS417_11835 0.22 -0.1 2,575,515 - PS417_11835 0.38 -0.1 2,575,570 - PS417_11835 0.43 -0.8 2,575,589 + PS417_11835 0.44 -0.0 2,575,718 + PS417_11835 0.55 +0.2 2,575,719 - PS417_11835 0.55 +0.8 2,575,887 - PS417_11835 0.69 -0.3 2,576,009 + PS417_11835 0.79 -0.5 2,576,010 - PS417_11835 0.79 +0.1 2,576,010 - PS417_11835 0.79 -0.2 2,576,102 + PS417_11835 0.87 +0.1 2,576,102 + PS417_11835 0.87 +0.1 2,576,103 - PS417_11835 0.87 -0.3 2,576,299 - +0.1 2,576,304 + -0.4 2,576,305 - -0.2 2,576,574 + PS417_11840 0.15 +0.2 2,576,575 - PS417_11840 0.16 -0.6 2,576,578 + -0.4 2,576,578 + PS417_11840 0.16 +0.2 2,576,579 - PS417_11840 0.16 +0.5 2,576,659 + PS417_11840 0.22 -0.1 2,576,659 + PS417_11840 0.22 -0.5 2,576,659 + PS417_11840 0.22 +0.6 2,576,659 + PS417_11840 0.22 -0.2 2,576,660 - PS417_11840 0.22 +0.1 2,576,865 + PS417_11840 0.36 -0.3 2,576,866 - PS417_11840 0.36 +0.6 2,576,960 - PS417_11840 0.43 +0.7 2,577,001 - PS417_11840 0.46 -0.3 2,577,050 + PS417_11840 0.49 -0.7 2,577,112 - PS417_11840 0.54 +0.4 2,577,234 + PS417_11840 0.62 -0.5 2,577,234 + PS417_11840 0.62 -0.2 2,577,241 - +0.6
Or see this region's nucleotide sequence