Strain Fitness in Pseudomonas simiae WCS417 around PS417_06325

Experiment: 80% Methanol 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06315 and PS417_06320 overlap by 4 nucleotidesPS417_06320 and PS417_06325 are separated by 129 nucleotidesPS417_06325 and PS417_06330 are separated by 109 nucleotides PS417_06315: PS417_06315 - cell division protein FtsB, at 1,403,981 to 1,404,259 _06315 PS417_06320: PS417_06320 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,404,256 to 1,404,963 _06320 PS417_06325: PS417_06325 - LysR family transcriptional regulator, at 1,405,093 to 1,405,989 _06325 PS417_06330: PS417_06330 - S-(hydroxymethyl)glutathione dehydrogenase, at 1,406,099 to 1,407,211 _06330 Position (kb) 1405 1406Strain fitness (log2 ratio) -3 -2 -1 0 1at 1405.127 kb on - strandat 1405.184 kb on + strand, within PS417_06325at 1405.268 kb on + strand, within PS417_06325at 1405.269 kb on - strand, within PS417_06325at 1405.269 kb on - strand, within PS417_06325at 1405.269 kb on - strand, within PS417_06325at 1405.271 kb on + strand, within PS417_06325at 1405.271 kb on + strand, within PS417_06325at 1405.272 kb on - strand, within PS417_06325at 1405.422 kb on + strand, within PS417_06325at 1405.423 kb on - strand, within PS417_06325at 1405.423 kb on - strand, within PS417_06325at 1405.446 kb on + strand, within PS417_06325at 1405.446 kb on + strand, within PS417_06325at 1405.447 kb on - strand, within PS417_06325at 1405.472 kb on + strand, within PS417_06325at 1405.493 kb on + strand, within PS417_06325at 1405.494 kb on - strand, within PS417_06325at 1405.494 kb on - strand, within PS417_06325at 1405.494 kb on - strand, within PS417_06325at 1406.122 kb on - strandat 1406.122 kb on - strandat 1406.234 kb on + strand, within PS417_06330at 1406.236 kb on + strand, within PS417_06330at 1406.363 kb on + strandat 1406.480 kb on + strand, within PS417_06330at 1406.504 kb on + strand, within PS417_06330at 1406.570 kb on - strand, within PS417_06330

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 0.5 mM; solid stress
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1,405,127 - -3.1
1,405,184 + PS417_06325 0.10 -0.8
1,405,268 + PS417_06325 0.20 -3.2
1,405,269 - PS417_06325 0.20 +0.6
1,405,269 - PS417_06325 0.20 -0.5
1,405,269 - PS417_06325 0.20 -1.6
1,405,271 + PS417_06325 0.20 -0.6
1,405,271 + PS417_06325 0.20 +0.2
1,405,272 - PS417_06325 0.20 -0.2
1,405,422 + PS417_06325 0.37 -0.4
1,405,423 - PS417_06325 0.37 +0.2
1,405,423 - PS417_06325 0.37 -1.4
1,405,446 + PS417_06325 0.39 -0.7
1,405,446 + PS417_06325 0.39 -0.3
1,405,447 - PS417_06325 0.39 -0.7
1,405,472 + PS417_06325 0.42 -0.4
1,405,493 + PS417_06325 0.45 -0.3
1,405,494 - PS417_06325 0.45 -0.1
1,405,494 - PS417_06325 0.45 -1.3
1,405,494 - PS417_06325 0.45 -3.0
1,406,122 - -1.6
1,406,122 - -1.9
1,406,234 + PS417_06330 0.12 -1.1
1,406,236 + PS417_06330 0.12 -1.1
1,406,363 + -0.5
1,406,480 + PS417_06330 0.34 -0.4
1,406,504 + PS417_06330 0.36 -0.9
1,406,570 - PS417_06330 0.42 -1.3

Or see this region's nucleotide sequence