Experiment: Fraxetin 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03990 and PS417_03995 are separated by 204 nucleotides PS417_03995 and PS417_04000 are separated by 2 nucleotides PS417_04000 and PS417_04005 are separated by 49 nucleotides
PS417_03990: PS417_03990 - ligand-gated channel protein, at 895,376 to 897,661
_03990
PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546
_03995
PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301
_04000
PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514
_04005
Position (kb) 898
899
900 Strain fitness (log2 ratio) -2
-1
0
1
2 at 897.639 kb on - strand at 897.698 kb on + strand at 898.075 kb on + strand, within PS417_03995 at 898.075 kb on + strand, within PS417_03995 at 898.075 kb on + strand, within PS417_03995 at 898.125 kb on - strand, within PS417_03995 at 898.125 kb on - strand, within PS417_03995 at 898.374 kb on - strand, within PS417_03995 at 898.511 kb on + strand at 898.512 kb on - strand at 898.512 kb on - strand at 898.559 kb on + strand at 898.560 kb on - strand at 898.788 kb on + strand, within PS417_04000 at 898.855 kb on + strand, within PS417_04000 at 898.894 kb on + strand, within PS417_04000 at 898.894 kb on + strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.901 kb on - strand, within PS417_04000 at 898.963 kb on + strand, within PS417_04000 at 899.117 kb on - strand, within PS417_04000 at 899.270 kb on - strand at 899.270 kb on - strand at 899.300 kb on - strand at 899.320 kb on + strand at 899.321 kb on - strand at 899.358 kb on + strand at 899.359 kb on - strand at 899.359 kb on - strand at 899.404 kb on - strand at 899.415 kb on + strand at 899.436 kb on + strand at 899.482 kb on - strand, within PS417_04005 at 899.490 kb on + strand, within PS417_04005 at 899.491 kb on - strand, within PS417_04005 at 899.628 kb on + strand, within PS417_04005 at 899.628 kb on + strand, within PS417_04005 at 899.628 kb on + strand at 899.659 kb on + strand, within PS417_04005 at 899.820 kb on + strand, within PS417_04005 at 899.820 kb on + strand, within PS417_04005 at 899.820 kb on + strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.229 kb on + strand, within PS417_04005 at 900.230 kb on - strand, within PS417_04005 at 900.273 kb on + strand, within PS417_04005 at 900.274 kb on - strand, within PS417_04005
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress remove 897,639 - -0.3 897,698 + -0.6 898,075 + PS417_03995 0.31 -2.5 898,075 + PS417_03995 0.31 -1.5 898,075 + PS417_03995 0.31 -0.6 898,125 - PS417_03995 0.38 -1.3 898,125 - PS417_03995 0.38 -2.5 898,374 - PS417_03995 0.75 +0.2 898,511 + -1.3 898,512 - +0.2 898,512 - -0.8 898,559 + -0.2 898,560 - +0.0 898,788 + PS417_04000 0.32 -2.6 898,855 + PS417_04000 0.41 -0.6 898,894 + PS417_04000 0.46 -0.6 898,894 + PS417_04000 0.46 +0.2 898,895 - PS417_04000 0.46 -0.5 898,895 - PS417_04000 0.46 -0.6 898,895 - PS417_04000 0.46 -0.7 898,895 - PS417_04000 0.46 -0.7 898,895 - PS417_04000 0.46 -1.9 898,900 + PS417_04000 0.47 -1.4 898,900 + PS417_04000 0.47 -0.5 898,900 + PS417_04000 0.47 -1.0 898,901 - PS417_04000 0.47 -1.3 898,963 + PS417_04000 0.55 +0.1 899,117 - PS417_04000 0.75 -0.8 899,270 - -0.2 899,270 - +0.3 899,300 - -0.3 899,320 + +0.0 899,321 - -0.4 899,358 + -2.0 899,359 - +0.0 899,359 - -0.7 899,404 - -0.2 899,415 + +0.4 899,436 + -0.2 899,482 - PS417_04005 0.11 -0.7 899,490 + PS417_04005 0.12 -0.4 899,491 - PS417_04005 0.12 +0.2 899,628 + PS417_04005 0.24 -0.7 899,628 + PS417_04005 0.24 -0.0 899,628 + -0.1 899,659 + PS417_04005 0.26 +0.8 899,820 + PS417_04005 0.40 -0.5 899,820 + PS417_04005 0.40 +0.0 899,820 + PS417_04005 0.40 +0.6 899,821 - PS417_04005 0.40 +0.3 899,821 - PS417_04005 0.40 -0.2 899,821 - PS417_04005 0.40 +0.8 899,821 - PS417_04005 0.40 -0.2 899,821 - PS417_04005 0.40 -2.3 900,096 + PS417_04005 0.64 +2.5 900,096 + PS417_04005 0.64 -0.0 900,096 + PS417_04005 0.64 +0.2 900,096 + PS417_04005 0.64 -0.4 900,096 + PS417_04005 0.64 +0.4 900,096 + PS417_04005 0.64 -0.0 900,097 - PS417_04005 0.64 -1.2 900,097 - PS417_04005 0.64 +0.6 900,097 - PS417_04005 0.64 +0.1 900,097 - PS417_04005 0.64 -1.2 900,097 - PS417_04005 0.64 +0.1 900,187 - PS417_04005 0.72 -0.1 900,187 - PS417_04005 0.72 -0.1 900,187 - PS417_04005 0.72 -0.7 900,229 + PS417_04005 0.75 -0.5 900,230 - PS417_04005 0.76 +0.1 900,273 + PS417_04005 0.79 +0.4 900,274 - PS417_04005 0.79 -0.6
Or see this region's nucleotide sequence