Experiment: Timeseries; NC condition; Bioreplicate 1; Time 5hrs; Measurement
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4662 and PP_4663 overlap by 11 nucleotides PP_4663 and PP_4664 are separated by 77 nucleotides PP_4664 and PP_4665 are separated by 141 nucleotides PP_4665 and PP_4666 are separated by 191 nucleotides
PP_4662: PP_4662 - conserved protein of unknown function, at 5,289,257 to 5,289,571
_4662
PP_4663: PP_4663 - conserved transmembrane protein of unknown function, at 5,289,561 to 5,290,325
_4663
PP_4664: PP_4664 - Transcriptional regulator, LysR family, at 5,290,403 to 5,291,284
_4664
PP_4665: PP_4665 - conserved protein of unknown function, at 5,291,426 to 5,291,770
_4665
PP_4666: PP_4666 - 3-hydroxyisobutyrate dehydrogenase, at 5,291,962 to 5,292,849
_4666
Position (kb)
5290
5291
5292 Strain fitness (log2 ratio)
-1
0
1 at 5289.506 kb on + strand, within PP_4662 at 5289.507 kb on - strand, within PP_4662 at 5289.507 kb on - strand, within PP_4662 at 5289.507 kb on - strand, within PP_4662 at 5289.748 kb on - strand, within PP_4663 at 5289.774 kb on - strand, within PP_4663 at 5289.833 kb on - strand, within PP_4663 at 5289.930 kb on + strand, within PP_4663 at 5289.930 kb on + strand, within PP_4663 at 5289.931 kb on - strand, within PP_4663 at 5289.958 kb on + strand, within PP_4663 at 5289.958 kb on + strand, within PP_4663 at 5289.959 kb on - strand, within PP_4663 at 5289.959 kb on - strand, within PP_4663 at 5289.959 kb on - strand, within PP_4663 at 5289.968 kb on - strand, within PP_4663 at 5290.266 kb on + strand at 5290.266 kb on + strand at 5290.266 kb on + strand at 5290.266 kb on + strand at 5290.266 kb on + strand at 5290.303 kb on + strand at 5290.304 kb on - strand at 5290.304 kb on - strand at 5290.368 kb on + strand at 5290.368 kb on + strand at 5290.369 kb on - strand at 5290.370 kb on + strand at 5290.370 kb on + strand at 5290.371 kb on - strand at 5290.573 kb on - strand, within PP_4664 at 5290.621 kb on - strand, within PP_4664 at 5290.721 kb on + strand, within PP_4664 at 5290.722 kb on - strand, within PP_4664 at 5290.745 kb on + strand, within PP_4664 at 5290.745 kb on + strand, within PP_4664 at 5290.745 kb on + strand, within PP_4664 at 5290.745 kb on + strand, within PP_4664 at 5290.746 kb on - strand, within PP_4664 at 5290.746 kb on - strand, within PP_4664 at 5290.746 kb on - strand, within PP_4664 at 5290.816 kb on + strand, within PP_4664 at 5290.816 kb on + strand, within PP_4664 at 5290.816 kb on + strand, within PP_4664 at 5290.979 kb on + strand, within PP_4664 at 5290.979 kb on + strand, within PP_4664 at 5290.979 kb on + strand, within PP_4664 at 5290.980 kb on - strand, within PP_4664 at 5291.015 kb on + strand, within PP_4664 at 5291.250 kb on - strand at 5291.385 kb on + strand at 5291.534 kb on + strand, within PP_4665 at 5291.535 kb on - strand, within PP_4665 at 5291.535 kb on - strand, within PP_4665 at 5291.535 kb on - strand, within PP_4665 at 5291.603 kb on + strand, within PP_4665 at 5291.603 kb on + strand, within PP_4665 at 5291.604 kb on - strand, within PP_4665 at 5291.604 kb on - strand, within PP_4665 at 5291.604 kb on - strand, within PP_4665 at 5291.604 kb on - strand, within PP_4665 at 5291.608 kb on + strand, within PP_4665 at 5291.609 kb on - strand at 5291.639 kb on + strand, within PP_4665 at 5291.640 kb on - strand, within PP_4665 at 5291.640 kb on - strand, within PP_4665 at 5291.722 kb on + strand, within PP_4665 at 5291.722 kb on + strand, within PP_4665 at 5291.745 kb on + strand at 5291.745 kb on + strand at 5291.746 kb on - strand at 5291.746 kb on - strand at 5291.749 kb on + strand at 5291.749 kb on + strand at 5291.749 kb on + strand at 5291.749 kb on + strand at 5291.749 kb on + strand at 5291.750 kb on - strand at 5291.750 kb on - strand at 5291.750 kb on - strand at 5291.753 kb on + strand at 5291.753 kb on + strand at 5291.754 kb on - strand at 5291.754 kb on - strand at 5291.794 kb on + strand at 5291.794 kb on + strand at 5291.794 kb on + strand at 5291.841 kb on + strand at 5291.842 kb on - strand at 5291.842 kb on - strand at 5291.842 kb on - strand at 5291.857 kb on + strand at 5291.857 kb on + strand at 5291.858 kb on - strand at 5291.916 kb on + strand at 5292.039 kb on - strand at 5292.150 kb on - strand, within PP_4666 at 5292.197 kb on + strand, within PP_4666 at 5292.197 kb on + strand, within PP_4666 at 5292.197 kb on + strand, within PP_4666 at 5292.198 kb on - strand, within PP_4666 at 5292.198 kb on - strand, within PP_4666 at 5292.258 kb on + strand, within PP_4666
Per-strain Table
Position Strand Gene LocusTag Fraction Timeseries; NC condition; Bioreplicate 1; Time 5hrs; Measurement remove 5,289,506 + PP_4662 0.79 -0.4 5,289,507 - PP_4662 0.79 +0.5 5,289,507 - PP_4662 0.79 -0.1 5,289,507 - PP_4662 0.79 +0.1 5,289,748 - PP_4663 0.24 -0.0 5,289,774 - PP_4663 0.28 +0.0 5,289,833 - PP_4663 0.36 +0.1 5,289,930 + PP_4663 0.48 +0.9 5,289,930 + PP_4663 0.48 -0.0 5,289,931 - PP_4663 0.48 -0.3 5,289,958 + PP_4663 0.52 +0.3 5,289,958 + PP_4663 0.52 +0.1 5,289,959 - PP_4663 0.52 -0.7 5,289,959 - PP_4663 0.52 -0.1 5,289,959 - PP_4663 0.52 -0.2 5,289,968 - PP_4663 0.53 -0.1 5,290,266 + +0.6 5,290,266 + +0.1 5,290,266 + +0.5 5,290,266 + -0.2 5,290,266 + -1.3 5,290,303 + +0.7 5,290,304 - -0.7 5,290,304 - +0.4 5,290,368 + +0.3 5,290,368 + -0.3 5,290,369 - -0.5 5,290,370 + +0.3 5,290,370 + -0.9 5,290,371 - -0.0 5,290,573 - PP_4664 0.19 +0.2 5,290,621 - PP_4664 0.25 +0.7 5,290,721 + PP_4664 0.36 +1.0 5,290,722 - PP_4664 0.36 +0.8 5,290,745 + PP_4664 0.39 +0.1 5,290,745 + PP_4664 0.39 -1.6 5,290,745 + PP_4664 0.39 +0.7 5,290,745 + PP_4664 0.39 +0.1 5,290,746 - PP_4664 0.39 -1.1 5,290,746 - PP_4664 0.39 +1.0 5,290,746 - PP_4664 0.39 +0.2 5,290,816 + PP_4664 0.47 +0.0 5,290,816 + PP_4664 0.47 -1.4 5,290,816 + PP_4664 0.47 +0.5 5,290,979 + PP_4664 0.65 +0.5 5,290,979 + PP_4664 0.65 +1.3 5,290,979 + PP_4664 0.65 +0.1 5,290,980 - PP_4664 0.65 +0.3 5,291,015 + PP_4664 0.69 -0.0 5,291,250 - +0.2 5,291,385 + +0.3 5,291,534 + PP_4665 0.31 +0.1 5,291,535 - PP_4665 0.32 +0.2 5,291,535 - PP_4665 0.32 -0.0 5,291,535 - PP_4665 0.32 +0.5 5,291,603 + PP_4665 0.51 -0.7 5,291,603 + PP_4665 0.51 -0.1 5,291,604 - PP_4665 0.52 +0.4 5,291,604 - PP_4665 0.52 -0.0 5,291,604 - PP_4665 0.52 -0.4 5,291,604 - PP_4665 0.52 +0.1 5,291,608 + PP_4665 0.53 +0.2 5,291,609 - +0.0 5,291,639 + PP_4665 0.62 -0.9 5,291,640 - PP_4665 0.62 +0.3 5,291,640 - PP_4665 0.62 +0.4 5,291,722 + PP_4665 0.86 -0.1 5,291,722 + PP_4665 0.86 -1.1 5,291,745 + -0.2 5,291,745 + -0.6 5,291,746 - -0.2 5,291,746 - -0.2 5,291,749 + -0.1 5,291,749 + -1.1 5,291,749 + -0.3 5,291,749 + +0.0 5,291,749 + -0.3 5,291,750 - -0.4 5,291,750 - -1.5 5,291,750 - -0.2 5,291,753 + -0.1 5,291,753 + +0.6 5,291,754 - +0.5 5,291,754 - +0.3 5,291,794 + +0.7 5,291,794 + -0.1 5,291,794 + +0.8 5,291,841 + +0.2 5,291,842 - +0.0 5,291,842 - -0.5 5,291,842 - -0.3 5,291,857 + +0.0 5,291,857 + -0.9 5,291,858 - -0.4 5,291,916 + -0.4 5,292,039 - +0.5 5,292,150 - PP_4666 0.21 -0.2 5,292,197 + PP_4666 0.26 -0.4 5,292,197 + PP_4666 0.26 +0.5 5,292,197 + PP_4666 0.26 +0.7 5,292,198 - PP_4666 0.27 -0.0 5,292,198 - PP_4666 0.27 -0.3 5,292,258 + PP_4666 0.33 +0.2
Or see this region's nucleotide sequence