Strain Fitness in Escherichia coli BW25113 around b2196

Experiment: 22hr_mediaonly_rep1_lowinoculum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	22hr_mediaonly_rep1_lowinoculum
2,290,056	-	ccmH	b2194	0.64	-0.7
2,290,070	+	ccmH	b2194	0.66	+0.7
2,290,113	-	ccmH	b2194	0.70	+0.6
2,290,113	-	ccmH	b2194	0.70	-0.2
2,290,124	-	ccmH	b2194	0.71	-0.2
2,290,124	-	ccmH	b2194	0.71	-0.8
2,290,130	+	ccmH	b2194	0.71	-0.1
2,290,331	+				+0.3
2,290,624	-	ccmG	b2195	0.35	-0.7
2,290,624	-	ccmG	b2195	0.35	+0.6
2,290,709	-	ccmG	b2195	0.50	+0.4
2,290,728	+	ccmG	b2195	0.54	+0.3
2,290,974	-				+1.1
2,290,974	-				+0.4
2,291,061	-				-1.4
2,291,061	-				-1.0
2,291,159	-				-0.0
2,291,177	-				+0.5
2,291,239	+	ccmF	b2196	0.13	+0.4
2,291,324	-	ccmF	b2196	0.18	-2.6
2,291,324	-	ccmF	b2196	0.18	-0.4
2,291,409	+	ccmF	b2196	0.22	+0.9
2,291,447	+	ccmF	b2196	0.24	+1.0
2,291,451	-	ccmF	b2196	0.24	-0.0
2,291,451	-	ccmF	b2196	0.24	+1.8
2,291,605	+	ccmF	b2196	0.32	-0.8
2,291,635	-	ccmF	b2196	0.34	+0.3
2,291,776	+	ccmF	b2196	0.41	-1.0
2,291,784	-	ccmF	b2196	0.41	+0.4
2,291,901	+	ccmF	b2196	0.47	+0.4
2,291,901	+	ccmF	b2196	0.47	-0.8
2,291,969	+	ccmF	b2196	0.51	+0.6
2,291,990	-	ccmF	b2196	0.52	-0.0
2,292,155	-	ccmF	b2196	0.60	+0.1
2,292,347	-	ccmF	b2196	0.70	-1.7
2,292,347	-	ccmF	b2196	0.70	-1.3
2,292,376	-	ccmF	b2196	0.72	-0.5
2,292,376	-	ccmF	b2196	0.72	-1.7
2,292,391	+	ccmF	b2196	0.72	-0.0
2,292,401	-	ccmF	b2196	0.73	+1.2
2,292,500	-	ccmF	b2196	0.78	-0.3
2,292,635	+	ccmF	b2196	0.85	+2.0
2,292,635	+	ccmF	b2196	0.85	-0.4
2,292,636	-	ccmF	b2196	0.85	+2.1
2,292,645	+	ccmF	b2196	0.85	-1.9
2,292,673	+	ccmF	b2196	0.87	-0.4
2,292,724	-	ccmF	b2196	0.90	-1.8
2,292,725	+	ccmF	b2196	0.90	-1.1
2,292,729	+	ccmF	b2196	0.90	+1.0
2,292,758	+				-1.0
2,292,758	+				-1.0
2,292,833	-				-0.3
2,292,847	+				+0.9
2,292,940	+				+0.2
2,292,946	-				+1.0
2,293,079	+	ccmE	b2197	0.33	-0.3
2,293,079	+	ccmE	b2197	0.33	+1.3
2,293,124	+	ccmE	b2197	0.42	+0.4
2,293,194	+	ccmE	b2197	0.56	-0.1
2,293,323	-	ccmE	b2197	0.83	+0.2
2,293,323	-	ccmE	b2197	0.83	+0.8
2,293,332	-	ccmE	b2197	0.85	+0.2
2,293,332	-	ccmE	b2197	0.85	-0.6
2,293,365	-				-0.3
2,293,450	+	ccmD	b2198	0.24	-0.8
2,293,526	-	ccmD	b2198	0.60	-2.4
2,293,757	-	ccmC	b2199	0.21	+0.1
2,293,866	-	ccmC	b2199	0.35	-2.1