Experiment: 3hr_mediaonly_rep1_lowinoculum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimK and ybjN are separated by 87 nucleotides ybjN and potF are separated by 350 nucleotides
b0852: rimK - ribosomal protein S6 modification protein (NCBI), at 891,190 to 892,092
rimK
b0853: ybjN - predicted oxidoreductase (NCBI), at 892,180 to 892,656
ybjN
b0854: potF - putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 893,007 to 894,119
potF
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1 at 891.213 kb on + strand at 891.222 kb on + strand at 891.243 kb on + strand at 891.251 kb on + strand at 891.251 kb on + strand at 891.251 kb on + strand at 891.251 kb on + strand at 891.254 kb on + strand at 891.387 kb on - strand, within rimK at 891.387 kb on - strand, within rimK at 891.703 kb on - strand, within rimK at 891.703 kb on - strand, within rimK at 891.766 kb on - strand, within rimK at 891.868 kb on - strand, within rimK at 892.020 kb on - strand at 892.167 kb on + strand at 892.206 kb on + strand at 892.244 kb on - strand, within ybjN at 892.284 kb on - strand, within ybjN at 892.284 kb on - strand, within ybjN at 892.304 kb on + strand, within ybjN at 892.389 kb on - strand, within ybjN at 892.389 kb on - strand, within ybjN at 892.411 kb on + strand, within ybjN at 892.411 kb on + strand, within ybjN at 892.524 kb on + strand, within ybjN at 892.550 kb on - strand, within ybjN at 892.609 kb on - strand at 892.609 kb on - strand at 893.167 kb on + strand, within potF at 893.261 kb on + strand, within potF at 893.352 kb on - strand, within potF at 893.362 kb on - strand, within potF at 893.400 kb on + strand, within potF at 893.408 kb on - strand, within potF at 893.408 kb on - strand, within potF at 893.490 kb on - strand, within potF
Per-strain Table
Position Strand Gene LocusTag Fraction 3hr_mediaonly_rep1_lowinoculum remove 891,213 + +0.4 891,222 + -0.1 891,243 + +0.6 891,251 + -1.0 891,251 + -0.1 891,251 + -1.2 891,251 + -0.3 891,254 + -0.1 891,387 - rimK b0852 0.22 +0.5 891,387 - rimK b0852 0.22 +0.2 891,703 - rimK b0852 0.57 +0.2 891,703 - rimK b0852 0.57 +0.3 891,766 - rimK b0852 0.64 -0.5 891,868 - rimK b0852 0.75 -0.8 892,020 - -0.2 892,167 + -0.2 892,206 + -0.7 892,244 - ybjN b0853 0.13 -0.6 892,284 - ybjN b0853 0.22 -2.1 892,284 - ybjN b0853 0.22 -0.5 892,304 + ybjN b0853 0.26 -0.7 892,389 - ybjN b0853 0.44 +0.1 892,389 - ybjN b0853 0.44 -1.0 892,411 + ybjN b0853 0.48 -0.3 892,411 + ybjN b0853 0.48 +0.1 892,524 + ybjN b0853 0.72 -0.4 892,550 - ybjN b0853 0.78 -1.4 892,609 - -0.5 892,609 - +0.2 893,167 + potF b0854 0.14 -0.8 893,261 + potF b0854 0.23 +0.2 893,352 - potF b0854 0.31 -1.8 893,362 - potF b0854 0.32 -1.4 893,400 + potF b0854 0.35 -0.4 893,408 - potF b0854 0.36 +0.2 893,408 - potF b0854 0.36 -0.2 893,490 - potF b0854 0.43 +0.2
Or see this region's nucleotide sequence