Strain Fitness in Escherichia coli BW25113 around b0321

Experiment: 22hr_MSC_rep2_highinoculum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyahF and yahG overlap by 1 nucleotidesyahG and yahI are separated by 421 nucleotides b0320: yahF - predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain (NCBI), at 336,002 to 337,549 yahF b0321: yahG - hypothetical protein (NCBI), at 337,549 to 338,967 yahG b0323: yahI - predicted carbamate kinase-like protein (NCBI), at 339,389 to 340,339 yahI Position (kb) 337 338 339Strain fitness (log2 ratio) -2 -1 0 1at 336.554 kb on - strand, within yahFat 337.024 kb on - strand, within yahFat 337.163 kb on - strand, within yahFat 337.169 kb on + strand, within yahFat 337.169 kb on + strand, within yahFat 337.236 kb on - strand, within yahFat 337.603 kb on + strandat 337.603 kb on + strandat 337.763 kb on + strand, within yahGat 337.763 kb on + strand, within yahGat 337.821 kb on + strand, within yahGat 337.829 kb on - strand, within yahGat 337.974 kb on - strand, within yahGat 337.974 kb on - strand, within yahGat 338.157 kb on + strand, within yahGat 338.157 kb on + strand, within yahGat 338.178 kb on + strand, within yahGat 338.183 kb on + strand, within yahGat 338.183 kb on + strand, within yahGat 338.188 kb on + strand, within yahGat 338.196 kb on - strand, within yahGat 338.196 kb on - strand, within yahGat 338.231 kb on + strand, within yahGat 338.237 kb on - strand, within yahGat 338.266 kb on + strand, within yahGat 338.365 kb on + strand, within yahGat 338.365 kb on + strand, within yahGat 338.424 kb on - strand, within yahGat 338.429 kb on - strand, within yahGat 338.551 kb on - strand, within yahGat 338.656 kb on - strand, within yahGat 338.902 kb on + strandat 338.902 kb on + strandat 339.006 kb on - strandat 339.184 kb on - strandat 339.195 kb on + strandat 339.195 kb on + strandat 339.203 kb on - strandat 339.203 kb on - strandat 339.378 kb on - strandat 339.390 kb on - strandat 339.390 kb on - strandat 339.411 kb on - strandat 339.431 kb on + strandat 339.444 kb on - strandat 339.565 kb on + strand, within yahIat 339.565 kb on + strand, within yahIat 339.630 kb on + strand, within yahIat 339.630 kb on + strand, within yahIat 339.741 kb on - strand, within yahIat 339.798 kb on + strand, within yahIat 339.806 kb on - strand, within yahI

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Per-strain Table

Position Strand Gene LocusTag Fraction 22hr_MSC_rep2_highinoculum
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336,554 - yahF b0320 0.36 -1.0
337,024 - yahF b0320 0.66 -0.0
337,163 - yahF b0320 0.75 -0.4
337,169 + yahF b0320 0.75 -0.2
337,169 + yahF b0320 0.75 -0.8
337,236 - yahF b0320 0.80 +0.2
337,603 + +1.1
337,603 + +0.2
337,763 + yahG b0321 0.15 -0.3
337,763 + yahG b0321 0.15 -0.9
337,821 + yahG b0321 0.19 -0.8
337,829 - yahG b0321 0.20 +0.3
337,974 - yahG b0321 0.30 +1.0
337,974 - yahG b0321 0.30 -0.5
338,157 + yahG b0321 0.43 -1.0
338,157 + yahG b0321 0.43 -0.2
338,178 + yahG b0321 0.44 -1.5
338,183 + yahG b0321 0.45 -1.9
338,183 + yahG b0321 0.45 -1.3
338,188 + yahG b0321 0.45 +0.4
338,196 - yahG b0321 0.46 -0.4
338,196 - yahG b0321 0.46 -0.4
338,231 + yahG b0321 0.48 -0.7
338,237 - yahG b0321 0.48 +0.2
338,266 + yahG b0321 0.51 -0.1
338,365 + yahG b0321 0.58 -0.5
338,365 + yahG b0321 0.58 +0.0
338,424 - yahG b0321 0.62 -0.2
338,429 - yahG b0321 0.62 -0.4
338,551 - yahG b0321 0.71 -0.5
338,656 - yahG b0321 0.78 +0.1
338,902 + -0.7
338,902 + -0.1
339,006 - -0.7
339,184 - -0.1
339,195 + -0.3
339,195 + -0.3
339,203 - -0.1
339,203 - -0.0
339,378 - -0.2
339,390 - +0.5
339,390 - -1.2
339,411 - -0.3
339,431 + +0.1
339,444 - +0.4
339,565 + yahI b0323 0.19 +0.2
339,565 + yahI b0323 0.19 +0.9
339,630 + yahI b0323 0.25 -0.5
339,630 + yahI b0323 0.25 -0.2
339,741 - yahI b0323 0.37 -0.6
339,798 + yahI b0323 0.43 -0.1
339,806 - yahI b0323 0.44 -0.5

Or see this region's nucleotide sequence