Strain Fitness in Escherichia coli BW25113 around b3413

Experiment: 22hr_MSC_rep1_highinoculum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	22hr_MSC_rep1_highinoculum
3,541,913	+	yhgA	b3411	0.82	+0.2
3,541,963	+	yhgA	b3411	0.88	+0.3
3,541,968	+	yhgA	b3411	0.89	-0.3
3,541,986	-				+2.2
3,541,986	-				-0.1
3,542,095	+				+1.3
3,542,103	-				-0.2
3,542,109	-				+0.9
3,542,115	-				+0.1
3,542,182	-	bioH	b3412	0.11	+0.4
3,542,182	-	bioH	b3412	0.11	+0.9
3,542,236	+	bioH	b3412	0.18	+0.0
3,542,244	-	bioH	b3412	0.19	+0.6
3,542,244	-	bioH	b3412	0.19	-0.7
3,542,244	-	bioH	b3412	0.19	-0.6
3,542,244	-	bioH	b3412	0.19	+0.4
3,542,361	+	bioH	b3412	0.34	-0.4
3,542,361	+	bioH	b3412	0.34	-0.0
3,542,366	+	bioH	b3412	0.35	-0.7
3,542,405	-	bioH	b3412	0.40	-0.0
3,542,441	-	bioH	b3412	0.45	+2.4
3,542,576	+	bioH	b3412	0.62	+0.2
3,542,576	+	bioH	b3412	0.62	+1.2
3,542,580	+	bioH	b3412	0.63	-1.0
3,542,584	+	bioH	b3412	0.63	-0.1
3,542,593	-	bioH	b3412	0.64	-1.0
3,542,692	+	bioH	b3412	0.77	+0.5
3,542,741	-	bioH	b3412	0.84	+0.6
3,542,741	-	bioH	b3412	0.84	-0.8
3,542,767	+	bioH	b3412	0.87	+1.4
3,542,767	+	bioH	b3412	0.87	+0.6
3,542,775	-	bioH	b3412	0.88	+0.6
3,542,775	-	bioH	b3412	0.88	-0.7
3,542,785	-	bioH	b3412	0.89	-1.3
3,542,797	+				+0.6
3,542,797	+				-1.1
3,542,800	-				+0.5
3,542,805	-				-0.3
3,542,805	-				-2.6
3,542,805	-				-0.5
3,542,812	-				+0.7
3,542,826	+				-1.3
3,542,830	+				+0.2
3,542,830	+				+0.3
3,542,893	+				+0.9
3,542,903	+				+0.1
3,542,903	+				+0.1
3,542,953	-				-0.7
3,542,953	-				-0.0
3,542,974	-	yhgH	b3413	0.10	-1.1
3,542,974	-	yhgH	b3413	0.10	-0.2
3,543,006	+	yhgH	b3413	0.15	-4.0
3,543,028	-	yhgH	b3413	0.18	-0.1
3,543,093	-	yhgH	b3413	0.28	+0.1
3,543,102	+	yhgH	b3413	0.29	-1.8
3,543,102	+	yhgH	b3413	0.29	-1.0
3,543,130	+	yhgH	b3413	0.33	+0.5
3,543,140	-	yhgH	b3413	0.35	+0.2
3,543,185	-	yhgH	b3413	0.41	-0.9
3,543,194	-	yhgH	b3413	0.42	-0.5
3,543,194	-	yhgH	b3413	0.42	+1.2
3,543,214	+	yhgH	b3413	0.45	-2.6
3,543,218	+	yhgH	b3413	0.46	-0.9
3,543,300	-	yhgH	b3413	0.58	+0.2
3,543,362	+	yhgH	b3413	0.67	+0.8
3,543,377	+	yhgH	b3413	0.69	-0.8
3,543,379	-	yhgH	b3413	0.69	+0.2
3,543,379	-	yhgH	b3413	0.69	-0.4
3,543,385	-	yhgH	b3413	0.70	-0.7
3,543,411	-	yhgH	b3413	0.74	-0.3
3,543,411	-	yhgH	b3413	0.74	+0.8
3,543,450	-	yhgH	b3413	0.80	+0.4
3,543,472	+	yhgH	b3413	0.83	-3.6
3,543,477	+	yhgH	b3413	0.84	-1.3
3,543,552	-				+0.7
3,543,555	+				-4.5
3,543,580	-				+0.8
3,543,580	-				+1.6
3,543,595	+				+0.3
3,543,632	+				+0.7
3,543,706	+	gntY	b3414	0.10	-2.6
3,543,706	+	gntY	b3414	0.10	-2.7
3,543,727	+	gntY	b3414	0.14	+0.1
3,543,737	+	gntY	b3414	0.16	+1.2
3,543,737	+	gntY	b3414	0.16	-1.0
3,543,737	+	gntY	b3414	0.16	+2.8
3,543,790	+	gntY	b3414	0.25	-2.7
3,543,796	+	gntY	b3414	0.26	-1.2
3,543,808	+	gntY	b3414	0.28	-2.6
3,543,836	+	gntY	b3414	0.33	-1.8
3,543,836	+	gntY	b3414	0.33	+1.9
3,543,849	+	gntY	b3414	0.35	-1.0
3,543,849	+	gntY	b3414	0.35	-2.1
3,543,860	+	gntY	b3414	0.37	-0.5
3,543,953	+	gntY	b3414	0.53	-0.3
3,543,964	+	gntY	b3414	0.55	-0.0
3,543,966	+	gntY	b3414	0.56	-0.8
3,543,966	+	gntY	b3414	0.56	-1.6
3,543,988	-	gntY	b3414	0.59	-2.1
3,543,991	-	gntY	b3414	0.60	+0.2
3,544,004	+	gntY	b3414	0.62	-3.2
3,544,026	-	gntY	b3414	0.66	+0.2
3,544,095	+	gntY	b3414	0.78	+1.1
3,544,181	+				+0.4
3,544,232	+				-0.6
3,544,232	+				-0.7
3,544,232	+				+0.1
3,544,240	-				+0.3
3,544,240	-				-1.4
3,544,286	-				+0.5
3,544,286	-				+0.1
3,544,288	-				+0.9
3,544,305	+				+0.6
3,544,320	-				-1.6
3,544,322	-				-0.2
3,544,329	-				+0.5
3,544,329	-				+0.6
3,544,391	+				+0.4
3,544,404	+				+0.2
3,544,404	+				+1.2
3,544,456	-				+1.0
3,544,457	+				+0.8
3,544,457	+				+0.6
3,544,493	+				+0.3
3,544,507	-				-0.6