Strain Fitness in Pseudomonas simiae WCS417 around PS417_25790

Experiment: Time6-phageFRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25780 and PS417_25785 are separated by 1 nucleotidesPS417_25785 and PS417_25790 overlap by 4 nucleotidesPS417_25790 and PS417_25795 are separated by 130 nucleotides PS417_25780: PS417_25780 - molecular chaperone DnaJ, at 5,566,149 to 5,566,916 _25780 PS417_25785: PS417_25785 - mannose-1-phosphate guanylyltransferase, at 5,566,918 to 5,567,592 _25785 PS417_25790: PS417_25790 - aminoglycoside phosphotransferase, at 5,567,589 to 5,568,614 _25790 PS417_25795: PS417_25795 - LPS biosynthesis protein, at 5,568,745 to 5,571,555 _25795 Position (kb) 5567 5568 5569Strain fitness (log2 ratio) -2 -1 0 1 2at 5567.593 kb on - strandat 5567.593 kb on - strandat 5567.593 kb on - strandat 5567.593 kb on - strandat 5567.677 kb on - strandat 5567.678 kb on + strandat 5567.679 kb on - strandat 5567.679 kb on - strandat 5567.680 kb on + strandat 5567.680 kb on + strandat 5567.932 kb on + strand, within PS417_25790at 5567.933 kb on - strand, within PS417_25790at 5567.948 kb on - strand, within PS417_25790at 5568.011 kb on + strand, within PS417_25790at 5568.011 kb on + strandat 5568.013 kb on + strand, within PS417_25790at 5568.013 kb on + strand, within PS417_25790at 5568.134 kb on - strand, within PS417_25790at 5568.182 kb on - strand, within PS417_25790at 5568.182 kb on - strand, within PS417_25790at 5568.591 kb on + strandat 5568.598 kb on - strandat 5568.615 kb on + strandat 5568.616 kb on - strandat 5568.659 kb on + strandat 5568.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-phageFRS
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5,567,593 - -0.3
5,567,593 - -0.9
5,567,593 - +1.0
5,567,593 - +2.3
5,567,677 - +0.2
5,567,678 + -0.8
5,567,679 - -1.9
5,567,679 - -0.7
5,567,680 + +0.5
5,567,680 + +0.0
5,567,932 + PS417_25790 0.33 -0.7
5,567,933 - PS417_25790 0.34 -0.3
5,567,948 - PS417_25790 0.35 -0.3
5,568,011 + PS417_25790 0.41 -0.1
5,568,011 + -0.7
5,568,013 + PS417_25790 0.41 +0.4
5,568,013 + PS417_25790 0.41 +0.8
5,568,134 - PS417_25790 0.53 -0.8
5,568,182 - PS417_25790 0.58 +0.9
5,568,182 - PS417_25790 0.58 -0.9
5,568,591 + -0.1
5,568,598 - -0.3
5,568,615 + -0.1
5,568,616 - +2.7
5,568,659 + -0.1
5,568,659 + -0.0

Or see this region's nucleotide sequence