Strain Fitness in Pseudomonas simiae WCS417 around PS417_17935

Experiment: Time6-phageFRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17930 and PS417_17935 overlap by 26 nucleotidesPS417_17935 and PS417_17940 are separated by 88 nucleotides PS417_17930: PS417_17930 - aldehyde dehydrogenase, at 3,912,686 to 3,914,173 _17930 PS417_17935: PS417_17935 - endoribonuclease L-PSP, at 3,914,148 to 3,914,570 _17935 PS417_17940: PS417_17940 - sorbosone dehydrogenase, at 3,914,659 to 3,915,999 _17940 Position (kb) 3914 3915Strain fitness (log2 ratio) -1 0 1 2at 3913.347 kb on + strand, within PS417_17930at 3913.823 kb on + strand, within PS417_17930at 3914.090 kb on - strandat 3914.262 kb on - strand, within PS417_17935at 3914.330 kb on - strand, within PS417_17935at 3914.480 kb on + strand, within PS417_17935at 3914.480 kb on + strandat 3914.480 kb on + strand, within PS417_17935at 3914.480 kb on + strand, within PS417_17935at 3915.034 kb on + strand, within PS417_17940at 3915.034 kb on + strand, within PS417_17940at 3915.056 kb on + strand, within PS417_17940at 3915.057 kb on - strand, within PS417_17940at 3915.074 kb on + strand, within PS417_17940at 3915.075 kb on - strand, within PS417_17940at 3915.323 kb on + strand, within PS417_17940at 3915.323 kb on + strand, within PS417_17940at 3915.323 kb on + strand, within PS417_17940at 3915.440 kb on + strand, within PS417_17940

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-phageFRS
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3,913,347 + PS417_17930 0.44 -0.3
3,913,823 + PS417_17930 0.76 +1.2
3,914,090 - +0.3
3,914,262 - PS417_17935 0.27 -0.3
3,914,330 - PS417_17935 0.43 +0.3
3,914,480 + PS417_17935 0.78 +0.2
3,914,480 + +0.1
3,914,480 + PS417_17935 0.78 -0.7
3,914,480 + PS417_17935 0.78 -0.7
3,915,034 + PS417_17940 0.28 -0.2
3,915,034 + PS417_17940 0.28 -0.2
3,915,056 + PS417_17940 0.30 +0.9
3,915,057 - PS417_17940 0.30 -0.2
3,915,074 + PS417_17940 0.31 +0.1
3,915,075 - PS417_17940 0.31 +0.1
3,915,323 + PS417_17940 0.50 +2.4
3,915,323 + PS417_17940 0.50 -1.2
3,915,323 + PS417_17940 0.50 +2.3
3,915,440 + PS417_17940 0.58 -0.1

Or see this region's nucleotide sequence