Strain Fitness in Pseudomonas simiae WCS417 around PS417_12155

Experiment: Time6-phageFRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12145 and PS417_12150 are separated by 100 nucleotidesPS417_12150 and PS417_12155 are separated by 7 nucleotidesPS417_12155 and PS417_12160 are separated by 285 nucleotides PS417_12145: PS417_12145 - acetoacetyl-CoA synthetase, at 2,635,820 to 2,637,778 _12145 PS417_12150: PS417_12150 - 3-hydroxybutyrate dehydrogenase, at 2,637,879 to 2,638,652 _12150 PS417_12155: PS417_12155 - transporter, at 2,638,660 to 2,640,051 _12155 PS417_12160: PS417_12160 - Fis family transcriptional regulator, at 2,640,337 to 2,641,746 _12160 Position (kb) 2638 2639 2640 2641Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2637.693 kb on + strandat 2637.693 kb on + strandat 2637.693 kb on + strandat 2637.798 kb on + strandat 2637.799 kb on - strandat 2637.799 kb on - strandat 2637.799 kb on - strandat 2637.802 kb on + strandat 2637.802 kb on + strandat 2637.802 kb on + strandat 2637.802 kb on + strandat 2637.803 kb on - strandat 2637.818 kb on + strandat 2637.819 kb on - strandat 2637.819 kb on - strandat 2638.679 kb on + strandat 2638.745 kb on + strandat 2638.746 kb on - strandat 2639.647 kb on - strand, within PS417_12155at 2639.721 kb on - strand, within PS417_12155at 2639.721 kb on - strand, within PS417_12155at 2639.753 kb on - strandat 2639.753 kb on - strand, within PS417_12155at 2639.857 kb on + strand, within PS417_12155at 2639.867 kb on + strand, within PS417_12155at 2639.989 kb on - strandat 2639.989 kb on - strandat 2639.991 kb on - strandat 2640.246 kb on + strandat 2640.278 kb on + strandat 2640.319 kb on - strandat 2640.319 kb on - strandat 2640.797 kb on + strand, within PS417_12160at 2640.797 kb on + strand, within PS417_12160at 2640.797 kb on + strand, within PS417_12160at 2640.868 kb on + strand, within PS417_12160

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-phageFRS
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2,637,693 + -0.8
2,637,693 + +1.0
2,637,693 + +1.4
2,637,798 + +1.8
2,637,799 - -0.2
2,637,799 - -2.0
2,637,799 - -1.4
2,637,802 + -0.0
2,637,802 + -0.7
2,637,802 + -0.8
2,637,802 + -0.6
2,637,803 - -0.0
2,637,818 + +2.2
2,637,819 - -0.7
2,637,819 - -0.2
2,638,679 + +1.8
2,638,745 + +2.8
2,638,746 - +0.1
2,639,647 - PS417_12155 0.71 -1.0
2,639,721 - PS417_12155 0.76 -0.7
2,639,721 - PS417_12155 0.76 -0.3
2,639,753 - -0.2
2,639,753 - PS417_12155 0.79 +0.8
2,639,857 + PS417_12155 0.86 -1.3
2,639,867 + PS417_12155 0.87 -1.3
2,639,989 - +0.2
2,639,989 - +1.0
2,639,991 - -0.1
2,640,246 + -0.0
2,640,278 + +0.3
2,640,319 - -1.9
2,640,319 - +1.0
2,640,797 + PS417_12160 0.33 +0.9
2,640,797 + PS417_12160 0.33 +1.4
2,640,797 + PS417_12160 0.33 +0.2
2,640,868 + PS417_12160 0.38 -0.0

Or see this region's nucleotide sequence