Strain Fitness in Pseudomonas simiae WCS417 around PS417_11540

Experiment: Time6-phageFRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11535 and PS417_11540 are separated by 1 nucleotidesPS417_11540 and PS417_11545 are separated by 34 nucleotides PS417_11535: PS417_11535 - nicotinate phosphoribosyltransferase, at 2,480,035 to 2,481,252 _11535 PS417_11540: PS417_11540 - NAD synthetase, at 2,481,254 to 2,482,063 _11540 PS417_11545: PS417_11545 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,482,098 to 2,483,129 _11545 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -2 -1 0 1 2at 2480.288 kb on - strand, within PS417_11535at 2480.341 kb on + strand, within PS417_11535at 2480.373 kb on + strand, within PS417_11535at 2480.503 kb on + strand, within PS417_11535at 2480.664 kb on + strand, within PS417_11535at 2480.885 kb on - strand, within PS417_11535at 2480.885 kb on - strand, within PS417_11535at 2481.211 kb on + strandat 2481.212 kb on - strandat 2481.926 kb on + strand, within PS417_11540at 2481.926 kb on + strand, within PS417_11540at 2481.926 kb on + strand, within PS417_11540at 2481.927 kb on - strand, within PS417_11540at 2481.932 kb on + strand, within PS417_11540at 2481.933 kb on - strand, within PS417_11540at 2481.945 kb on - strand, within PS417_11540at 2482.061 kb on + strandat 2482.061 kb on + strandat 2482.402 kb on + strand, within PS417_11545at 2482.741 kb on + strand, within PS417_11545at 2482.742 kb on - strand, within PS417_11545at 2482.867 kb on + strand, within PS417_11545

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-phageFRS
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2,480,288 - PS417_11535 0.21 -0.3
2,480,341 + PS417_11535 0.25 +0.0
2,480,373 + PS417_11535 0.28 -0.3
2,480,503 + PS417_11535 0.38 +0.0
2,480,664 + PS417_11535 0.52 +0.5
2,480,885 - PS417_11535 0.70 -0.8
2,480,885 - PS417_11535 0.70 +2.5
2,481,211 + -0.1
2,481,212 - -0.7
2,481,926 + PS417_11540 0.83 -0.1
2,481,926 + PS417_11540 0.83 -0.5
2,481,926 + PS417_11540 0.83 -1.3
2,481,927 - PS417_11540 0.83 -1.1
2,481,932 + PS417_11540 0.84 -2.3
2,481,933 - PS417_11540 0.84 -1.2
2,481,945 - PS417_11540 0.85 -0.3
2,482,061 + -0.9
2,482,061 + -0.6
2,482,402 + PS417_11545 0.29 -0.1
2,482,741 + PS417_11545 0.62 -0.1
2,482,742 - PS417_11545 0.62 -0.0
2,482,867 + PS417_11545 0.75 -0.2

Or see this region's nucleotide sequence