Strain Fitness in Pseudomonas simiae WCS417 around PS417_11340

Experiment: Time6-phageFRS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11335 and PS417_11340 are separated by 413 nucleotidesPS417_11340 and PS417_11345 are separated by 59 nucleotides PS417_11335: PS417_11335 - AsnC family transcriptional regulator, at 2,441,742 to 2,442,239 _11335 PS417_11340: PS417_11340 - prevent-host-death protein, at 2,442,653 to 2,443,246 _11340 PS417_11345: PS417_11345 - membrane protein, at 2,443,306 to 2,444,889 _11345 Position (kb) 2442 2443 2444Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2441.667 kb on + strandat 2441.984 kb on + strand, within PS417_11335at 2442.007 kb on + strand, within PS417_11335at 2442.008 kb on - strand, within PS417_11335at 2442.039 kb on + strand, within PS417_11335at 2442.039 kb on + strand, within PS417_11335at 2442.039 kb on + strand, within PS417_11335at 2442.100 kb on - strand, within PS417_11335at 2442.108 kb on + strand, within PS417_11335at 2442.109 kb on - strandat 2442.110 kb on + strand, within PS417_11335at 2442.110 kb on + strand, within PS417_11335at 2442.110 kb on + strand, within PS417_11335at 2442.111 kb on - strand, within PS417_11335at 2442.111 kb on - strandat 2442.111 kb on - strand, within PS417_11335at 2442.133 kb on - strand, within PS417_11335at 2442.157 kb on - strand, within PS417_11335at 2442.196 kb on - strandat 2442.241 kb on + strandat 2442.242 kb on - strandat 2442.242 kb on - strandat 2442.242 kb on - strandat 2442.432 kb on + strandat 2442.473 kb on + strandat 2442.474 kb on - strandat 2442.652 kb on + strandat 2442.653 kb on - strandat 2442.818 kb on + strand, within PS417_11340at 2443.004 kb on + strand, within PS417_11340at 2443.934 kb on - strand, within PS417_11345

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-phageFRS
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2,441,667 + -0.5
2,441,984 + PS417_11335 0.49 -0.1
2,442,007 + PS417_11335 0.53 +0.2
2,442,008 - PS417_11335 0.53 -0.3
2,442,039 + PS417_11335 0.60 -0.4
2,442,039 + PS417_11335 0.60 -1.1
2,442,039 + PS417_11335 0.60 -0.1
2,442,100 - PS417_11335 0.72 -0.2
2,442,108 + PS417_11335 0.73 -0.5
2,442,109 - +1.1
2,442,110 + PS417_11335 0.74 -1.1
2,442,110 + PS417_11335 0.74 -0.9
2,442,110 + PS417_11335 0.74 +0.7
2,442,111 - PS417_11335 0.74 -1.3
2,442,111 - -0.9
2,442,111 - PS417_11335 0.74 -0.3
2,442,133 - PS417_11335 0.79 -0.4
2,442,157 - PS417_11335 0.83 +1.1
2,442,196 - -1.1
2,442,241 + -0.0
2,442,242 - -2.3
2,442,242 - -1.1
2,442,242 - +0.2
2,442,432 + -1.4
2,442,473 + +0.3
2,442,474 - +3.3
2,442,652 + +1.7
2,442,653 - -0.5
2,442,818 + PS417_11340 0.28 -0.5
2,443,004 + PS417_11340 0.59 -1.1
2,443,934 - PS417_11345 0.40 -0.3

Or see this region's nucleotide sequence