Strain Fitness in Pseudomonas simiae WCS417 around PS417_18780

Experiment: Time6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18775 and PS417_18780 are separated by 8 nucleotidesPS417_18780 and PS417_18790 are separated by 180 nucleotidesPS417_18790 and PS417_18795 are separated by 112 nucleotides PS417_18775: PS417_18775 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 4,072,091 to 4,073,119 _18775 PS417_18780: PS417_18780 - flavin reductase, at 4,073,128 to 4,073,637 _18780 PS417_18790: PS417_18790 - amino acid transporter LysE, at 4,073,818 to 4,074,426 _18790 PS417_18795: PS417_18795 - LysR family transcriptional regulator, at 4,074,539 to 4,075,402 _18795 Position (kb) 4073 4074Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4072.133 kb on - strandat 4072.514 kb on + strand, within PS417_18775at 4072.528 kb on + strand, within PS417_18775at 4072.528 kb on + strand, within PS417_18775at 4072.703 kb on - strand, within PS417_18775at 4072.793 kb on + strand, within PS417_18775at 4072.856 kb on - strand, within PS417_18775at 4072.856 kb on - strand, within PS417_18775at 4073.258 kb on - strand, within PS417_18780at 4073.318 kb on - strand, within PS417_18780at 4073.749 kb on - strandat 4073.749 kb on - strandat 4073.874 kb on + strandat 4073.874 kb on + strandat 4073.875 kb on - strandat 4073.940 kb on - strand, within PS417_18790at 4073.940 kb on - strand, within PS417_18790at 4073.966 kb on + strand, within PS417_18790at 4073.966 kb on + strand, within PS417_18790at 4073.966 kb on + strand, within PS417_18790at 4073.967 kb on - strand, within PS417_18790at 4073.967 kb on - strand, within PS417_18790at 4073.967 kb on - strand, within PS417_18790at 4074.301 kb on - strand, within PS417_18790at 4074.401 kb on + strandat 4074.401 kb on + strandat 4074.402 kb on - strandat 4074.402 kb on - strandat 4074.402 kb on - strandat 4074.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-nophage
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4,072,133 - +1.1
4,072,514 + PS417_18775 0.41 +0.8
4,072,528 + PS417_18775 0.42 +2.6
4,072,528 + PS417_18775 0.42 -0.8
4,072,703 - PS417_18775 0.59 -0.2
4,072,793 + PS417_18775 0.68 -0.1
4,072,856 - PS417_18775 0.74 -0.4
4,072,856 - PS417_18775 0.74 -1.5
4,073,258 - PS417_18780 0.25 +2.9
4,073,318 - PS417_18780 0.37 -0.7
4,073,749 - +0.2
4,073,749 - -1.2
4,073,874 + -0.3
4,073,874 + -0.2
4,073,875 - -2.3
4,073,940 - PS417_18790 0.20 +1.0
4,073,940 - PS417_18790 0.20 +0.3
4,073,966 + PS417_18790 0.24 -0.1
4,073,966 + PS417_18790 0.24 +0.9
4,073,966 + PS417_18790 0.24 -0.6
4,073,967 - PS417_18790 0.24 +0.3
4,073,967 - PS417_18790 0.24 -1.5
4,073,967 - PS417_18790 0.24 -1.5
4,074,301 - PS417_18790 0.79 -0.6
4,074,401 + +1.6
4,074,401 + +0.6
4,074,402 - -0.4
4,074,402 - +0.5
4,074,402 - +0.3
4,074,526 - -0.4

Or see this region's nucleotide sequence