Experiment: Time6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17480 and PS417_17485 are separated by 30 nucleotides PS417_17485 and PS417_17490 overlap by 4 nucleotides PS417_17490 and PS417_17495 overlap by 4 nucleotides
PS417_17480: PS417_17480 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,818,835 to 3,820,007
_17480
PS417_17485: PS417_17485 - membrane protein, at 3,820,038 to 3,820,997
_17485
PS417_17490: PS417_17490 - ABC transporter ATP-binding protein, at 3,820,994 to 3,821,734
_17490
PS417_17495: PS417_17495 - multidrug ABC transporter permease, at 3,821,731 to 3,822,522
_17495
Position (kb)
3820
3821 Strain fitness (log2 ratio)
-1
0
1
2 at 3819.068 kb on + strand, within PS417_17480 at 3819.069 kb on - strand, within PS417_17480 at 3819.089 kb on - strand, within PS417_17480 at 3819.279 kb on - strand, within PS417_17480 at 3819.279 kb on - strand, within PS417_17480 at 3819.565 kb on - strand, within PS417_17480 at 3820.013 kb on + strand at 3820.013 kb on + strand at 3820.230 kb on + strand, within PS417_17485 at 3820.357 kb on - strand, within PS417_17485 at 3820.357 kb on - strand, within PS417_17485 at 3820.357 kb on - strand, within PS417_17485 at 3820.357 kb on - strand, within PS417_17485 at 3820.752 kb on + strand, within PS417_17485 at 3820.752 kb on + strand, within PS417_17485 at 3820.824 kb on + strand, within PS417_17485 at 3820.824 kb on + strand, within PS417_17485 at 3820.862 kb on + strand, within PS417_17485 at 3821.150 kb on + strand, within PS417_17490 at 3821.556 kb on + strand, within PS417_17490 at 3821.556 kb on + strand, within PS417_17490 at 3821.741 kb on - strand at 3821.905 kb on + strand, within PS417_17495 at 3821.905 kb on + strand, within PS417_17495 at 3821.905 kb on + strand, within PS417_17495 at 3821.906 kb on - strand, within PS417_17495 at 3821.923 kb on + strand, within PS417_17495 at 3821.992 kb on + strand, within PS417_17495
Per-strain Table
Position Strand Gene LocusTag Fraction Time6-nophage remove 3,819,068 + PS417_17480 0.20 -0.7 3,819,069 - PS417_17480 0.20 +2.0 3,819,089 - PS417_17480 0.22 -1.5 3,819,279 - PS417_17480 0.38 +0.0 3,819,279 - PS417_17480 0.38 +0.6 3,819,565 - PS417_17480 0.62 -0.2 3,820,013 + +1.0 3,820,013 + -0.2 3,820,230 + PS417_17485 0.20 +0.1 3,820,357 - PS417_17485 0.33 -1.0 3,820,357 - PS417_17485 0.33 +0.7 3,820,357 - PS417_17485 0.33 +0.7 3,820,357 - PS417_17485 0.33 +0.8 3,820,752 + PS417_17485 0.74 +0.0 3,820,752 + PS417_17485 0.74 -0.8 3,820,824 + PS417_17485 0.82 +0.6 3,820,824 + PS417_17485 0.82 -0.4 3,820,862 + PS417_17485 0.86 -0.4 3,821,150 + PS417_17490 0.21 -1.2 3,821,556 + PS417_17490 0.76 -1.3 3,821,556 + PS417_17490 0.76 +1.8 3,821,741 - -1.1 3,821,905 + PS417_17495 0.22 +0.0 3,821,905 + PS417_17495 0.22 -0.6 3,821,905 + PS417_17495 0.22 +0.4 3,821,906 - PS417_17495 0.22 -0.1 3,821,923 + PS417_17495 0.24 +0.0 3,821,992 + PS417_17495 0.33 -0.4
Or see this region's nucleotide sequence