Strain Fitness in Pseudomonas simiae WCS417 around PS417_13565

Experiment: Time6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13555 and PS417_13560 are separated by 7 nucleotidesPS417_13560 and PS417_13565 overlap by 4 nucleotidesPS417_13565 and PS417_13575 are separated by 585 nucleotides PS417_13555: PS417_13555 - ABC transporter permease, at 2,987,174 to 2,987,878 _13555 PS417_13560: PS417_13560 - nickel permease, at 2,987,886 to 2,988,584 _13560 PS417_13565: PS417_13565 - permease, at 2,988,581 to 2,989,579 _13565 PS417_13575: PS417_13575 - succinylglutamate desuccinylase, at 2,990,165 to 2,991,163 _13575 Position (kb) 2988 2989 2990Strain fitness (log2 ratio) -2 -1 0 1 2at 2987.774 kb on + strand, within PS417_13555at 2987.795 kb on + strand, within PS417_13555at 2987.795 kb on + strand, within PS417_13555at 2987.795 kb on + strand, within PS417_13555at 2987.796 kb on - strand, within PS417_13555at 2987.796 kb on - strand, within PS417_13555at 2987.823 kb on - strandat 2987.823 kb on - strandat 2987.899 kb on + strandat 2987.904 kb on + strandat 2987.904 kb on + strandat 2987.905 kb on - strandat 2988.048 kb on + strand, within PS417_13560at 2988.100 kb on - strand, within PS417_13560at 2988.163 kb on - strand, within PS417_13560at 2988.183 kb on + strand, within PS417_13560at 2988.184 kb on - strand, within PS417_13560at 2988.219 kb on + strand, within PS417_13560at 2988.219 kb on + strand, within PS417_13560at 2988.471 kb on + strand, within PS417_13560at 2988.471 kb on + strand, within PS417_13560at 2988.471 kb on + strand, within PS417_13560at 2988.472 kb on - strand, within PS417_13560at 2988.502 kb on - strand, within PS417_13560at 2988.502 kb on - strand, within PS417_13560at 2988.681 kb on - strand, within PS417_13565at 2988.839 kb on + strand, within PS417_13565at 2988.840 kb on - strand, within PS417_13565at 2988.840 kb on - strand, within PS417_13565at 2988.885 kb on - strand, within PS417_13565at 2989.012 kb on + strand, within PS417_13565at 2989.069 kb on + strand, within PS417_13565at 2989.070 kb on - strand, within PS417_13565at 2989.070 kb on - strand, within PS417_13565at 2989.073 kb on + strand, within PS417_13565at 2989.074 kb on - strand, within PS417_13565at 2989.074 kb on - strand, within PS417_13565at 2989.074 kb on - strand, within PS417_13565at 2989.074 kb on - strand, within PS417_13565at 2989.304 kb on + strand, within PS417_13565at 2989.675 kb on - strandat 2989.999 kb on + strandat 2990.142 kb on - strandat 2990.149 kb on + strandat 2990.310 kb on + strand, within PS417_13575at 2990.374 kb on + strand, within PS417_13575

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-nophage
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2,987,774 + PS417_13555 0.85 +0.7
2,987,795 + PS417_13555 0.88 -0.7
2,987,795 + PS417_13555 0.88 +1.7
2,987,795 + PS417_13555 0.88 +1.1
2,987,796 - PS417_13555 0.88 +1.7
2,987,796 - PS417_13555 0.88 -0.9
2,987,823 - +0.3
2,987,823 - +1.2
2,987,899 + +0.3
2,987,904 + -0.7
2,987,904 + +0.5
2,987,905 - -1.6
2,988,048 + PS417_13560 0.23 +0.7
2,988,100 - PS417_13560 0.31 -0.9
2,988,163 - PS417_13560 0.40 +0.3
2,988,183 + PS417_13560 0.42 -0.2
2,988,184 - PS417_13560 0.43 -1.0
2,988,219 + PS417_13560 0.48 +1.1
2,988,219 + PS417_13560 0.48 -0.5
2,988,471 + PS417_13560 0.84 -0.1
2,988,471 + PS417_13560 0.84 +2.5
2,988,471 + PS417_13560 0.84 -1.1
2,988,472 - PS417_13560 0.84 +0.2
2,988,502 - PS417_13560 0.88 -0.7
2,988,502 - PS417_13560 0.88 -1.5
2,988,681 - PS417_13565 0.10 +1.7
2,988,839 + PS417_13565 0.26 -0.7
2,988,840 - PS417_13565 0.26 +0.4
2,988,840 - PS417_13565 0.26 +0.7
2,988,885 - PS417_13565 0.30 +0.3
2,989,012 + PS417_13565 0.43 -1.7
2,989,069 + PS417_13565 0.49 -2.0
2,989,070 - PS417_13565 0.49 +0.4
2,989,070 - PS417_13565 0.49 +0.2
2,989,073 + PS417_13565 0.49 +0.7
2,989,074 - PS417_13565 0.49 +0.1
2,989,074 - PS417_13565 0.49 -0.4
2,989,074 - PS417_13565 0.49 +0.1
2,989,074 - PS417_13565 0.49 -0.7
2,989,304 + PS417_13565 0.72 +0.4
2,989,675 - +0.3
2,989,999 + -0.1
2,990,142 - -0.3
2,990,149 + -0.7
2,990,310 + PS417_13575 0.15 +0.3
2,990,374 + PS417_13575 0.21 +0.7

Or see this region's nucleotide sequence