Experiment: Time6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13555 and PS417_13560 are separated by 7 nucleotides PS417_13560 and PS417_13565 overlap by 4 nucleotides PS417_13565 and PS417_13575 are separated by 585 nucleotides
PS417_13555: PS417_13555 - ABC transporter permease, at 2,987,174 to 2,987,878
_13555
PS417_13560: PS417_13560 - nickel permease, at 2,987,886 to 2,988,584
_13560
PS417_13565: PS417_13565 - permease, at 2,988,581 to 2,989,579
_13565
PS417_13575: PS417_13575 - succinylglutamate desuccinylase, at 2,990,165 to 2,991,163
_13575
Position (kb)
2988
2989
2990 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2987.774 kb on + strand, within PS417_13555 at 2987.795 kb on + strand, within PS417_13555 at 2987.795 kb on + strand, within PS417_13555 at 2987.795 kb on + strand, within PS417_13555 at 2987.796 kb on - strand, within PS417_13555 at 2987.796 kb on - strand, within PS417_13555 at 2987.823 kb on - strand at 2987.823 kb on - strand at 2987.899 kb on + strand at 2987.904 kb on + strand at 2987.904 kb on + strand at 2987.905 kb on - strand at 2988.048 kb on + strand, within PS417_13560 at 2988.100 kb on - strand, within PS417_13560 at 2988.163 kb on - strand, within PS417_13560 at 2988.183 kb on + strand, within PS417_13560 at 2988.184 kb on - strand, within PS417_13560 at 2988.219 kb on + strand, within PS417_13560 at 2988.219 kb on + strand, within PS417_13560 at 2988.471 kb on + strand, within PS417_13560 at 2988.471 kb on + strand, within PS417_13560 at 2988.471 kb on + strand, within PS417_13560 at 2988.472 kb on - strand, within PS417_13560 at 2988.502 kb on - strand, within PS417_13560 at 2988.502 kb on - strand, within PS417_13560 at 2988.681 kb on - strand, within PS417_13565 at 2988.839 kb on + strand, within PS417_13565 at 2988.840 kb on - strand, within PS417_13565 at 2988.840 kb on - strand, within PS417_13565 at 2988.885 kb on - strand, within PS417_13565 at 2989.012 kb on + strand, within PS417_13565 at 2989.069 kb on + strand, within PS417_13565 at 2989.070 kb on - strand, within PS417_13565 at 2989.070 kb on - strand, within PS417_13565 at 2989.073 kb on + strand, within PS417_13565 at 2989.074 kb on - strand, within PS417_13565 at 2989.074 kb on - strand, within PS417_13565 at 2989.074 kb on - strand, within PS417_13565 at 2989.074 kb on - strand, within PS417_13565 at 2989.304 kb on + strand, within PS417_13565 at 2989.675 kb on - strand at 2989.999 kb on + strand at 2990.142 kb on - strand at 2990.149 kb on + strand at 2990.310 kb on + strand, within PS417_13575 at 2990.374 kb on + strand, within PS417_13575
Per-strain Table
Position Strand Gene LocusTag Fraction Time6-nophage remove 2,987,774 + PS417_13555 0.85 +0.7 2,987,795 + PS417_13555 0.88 -0.7 2,987,795 + PS417_13555 0.88 +1.7 2,987,795 + PS417_13555 0.88 +1.1 2,987,796 - PS417_13555 0.88 +1.7 2,987,796 - PS417_13555 0.88 -0.9 2,987,823 - +0.3 2,987,823 - +1.2 2,987,899 + +0.3 2,987,904 + -0.7 2,987,904 + +0.5 2,987,905 - -1.6 2,988,048 + PS417_13560 0.23 +0.7 2,988,100 - PS417_13560 0.31 -0.9 2,988,163 - PS417_13560 0.40 +0.3 2,988,183 + PS417_13560 0.42 -0.2 2,988,184 - PS417_13560 0.43 -1.0 2,988,219 + PS417_13560 0.48 +1.1 2,988,219 + PS417_13560 0.48 -0.5 2,988,471 + PS417_13560 0.84 -0.1 2,988,471 + PS417_13560 0.84 +2.5 2,988,471 + PS417_13560 0.84 -1.1 2,988,472 - PS417_13560 0.84 +0.2 2,988,502 - PS417_13560 0.88 -0.7 2,988,502 - PS417_13560 0.88 -1.5 2,988,681 - PS417_13565 0.10 +1.7 2,988,839 + PS417_13565 0.26 -0.7 2,988,840 - PS417_13565 0.26 +0.4 2,988,840 - PS417_13565 0.26 +0.7 2,988,885 - PS417_13565 0.30 +0.3 2,989,012 + PS417_13565 0.43 -1.7 2,989,069 + PS417_13565 0.49 -2.0 2,989,070 - PS417_13565 0.49 +0.4 2,989,070 - PS417_13565 0.49 +0.2 2,989,073 + PS417_13565 0.49 +0.7 2,989,074 - PS417_13565 0.49 +0.1 2,989,074 - PS417_13565 0.49 -0.4 2,989,074 - PS417_13565 0.49 +0.1 2,989,074 - PS417_13565 0.49 -0.7 2,989,304 + PS417_13565 0.72 +0.4 2,989,675 - +0.3 2,989,999 + -0.1 2,990,142 - -0.3 2,990,149 + -0.7 2,990,310 + PS417_13575 0.15 +0.3 2,990,374 + PS417_13575 0.21 +0.7
Or see this region's nucleotide sequence