Strain Fitness in Pseudomonas simiae WCS417 around PS417_13075

Experiment: Time6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13065 and PS417_13070 overlap by 4 nucleotidesPS417_13070 and PS417_13075 are separated by 385 nucleotidesPS417_13075 and PS417_13080 overlap by 4 nucleotides PS417_13065: PS417_13065 - UDP pyrophosphate phosphatase, at 2,855,680 to 2,856,510 _13065 PS417_13070: PS417_13070 - membrane protein, at 2,856,507 to 2,856,890 _13070 PS417_13075: PS417_13075 - hypothetical protein, at 2,857,276 to 2,857,632 _13075 PS417_13080: PS417_13080 - LysR family transcriptional regulator, at 2,857,629 to 2,858,537 _13080 Position (kb) 2857 2858Strain fitness (log2 ratio) -1 0 1at 2856.284 kb on - strand, within PS417_13065at 2856.415 kb on + strand, within PS417_13065at 2856.416 kb on - strand, within PS417_13065at 2856.416 kb on - strandat 2856.452 kb on + strandat 2857.057 kb on - strandat 2857.057 kb on - strandat 2857.060 kb on + strandat 2857.082 kb on + strandat 2857.086 kb on + strandat 2857.087 kb on - strandat 2857.152 kb on + strandat 2857.152 kb on + strandat 2857.153 kb on - strandat 2857.153 kb on - strandat 2857.174 kb on - strandat 2857.251 kb on + strandat 2857.251 kb on + strandat 2857.251 kb on + strandat 2857.252 kb on - strandat 2857.252 kb on - strandat 2857.255 kb on + strandat 2857.256 kb on - strandat 2857.256 kb on - strandat 2857.566 kb on + strand, within PS417_13075at 2857.567 kb on - strand, within PS417_13075at 2857.567 kb on - strand, within PS417_13075at 2857.804 kb on + strand, within PS417_13080at 2857.804 kb on + strand, within PS417_13080at 2858.512 kb on + strandat 2858.513 kb on - strandat 2858.513 kb on - strandat 2858.515 kb on + strandat 2858.516 kb on - strandat 2858.571 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-nophage
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2,856,284 - PS417_13065 0.73 +1.2
2,856,415 + PS417_13065 0.88 +0.2
2,856,416 - PS417_13065 0.89 +0.1
2,856,416 - +0.7
2,856,452 + -0.9
2,857,057 - -0.9
2,857,057 - -0.7
2,857,060 + -1.5
2,857,082 + +0.9
2,857,086 + +0.7
2,857,087 - +0.1
2,857,152 + +0.3
2,857,152 + -1.1
2,857,153 - -0.1
2,857,153 - -0.3
2,857,174 - -0.7
2,857,251 + -0.3
2,857,251 + +1.7
2,857,251 + -0.1
2,857,252 - -0.6
2,857,252 - +0.3
2,857,255 + -1.1
2,857,256 - -0.8
2,857,256 - +0.8
2,857,566 + PS417_13075 0.81 -1.1
2,857,567 - PS417_13075 0.82 +0.1
2,857,567 - PS417_13075 0.82 -1.0
2,857,804 + PS417_13080 0.19 -0.7
2,857,804 + PS417_13080 0.19 -0.7
2,858,512 + +0.6
2,858,513 - -0.1
2,858,513 - -0.7
2,858,515 + +0.7
2,858,516 - -0.2
2,858,571 + -0.5

Or see this region's nucleotide sequence