Strain Fitness in Pseudomonas simiae WCS417 around PS417_12130

Experiment: Time6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12125 and PS417_12130 are separated by 10 nucleotidesPS417_12130 and PS417_12135 are separated by 63 nucleotidesPS417_12135 and PS417_12140 are separated by 43 nucleotides PS417_12125: PS417_12125 - D-glucosaminate dehydratase (EC 4.3.1.9) (from data), at 2,630,658 to 2,631,866 _12125 PS417_12130: PS417_12130 - ketodeoxygluconokinase, at 2,631,877 to 2,632,806 _12130 PS417_12135: PS417_12135 - peptidylprolyl isomerase, at 2,632,870 to 2,633,145 _12135 PS417_12140: PS417_12140 - histidine kinase, at 2,633,189 to 2,635,684 _12140 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -1 0 1 2at 2631.109 kb on - strand, within PS417_12125at 2631.216 kb on + strand, within PS417_12125at 2631.418 kb on + strand, within PS417_12125at 2631.435 kb on + strandat 2631.436 kb on - strand, within PS417_12125at 2631.459 kb on + strand, within PS417_12125at 2631.459 kb on + strand, within PS417_12125at 2631.459 kb on + strand, within PS417_12125at 2631.460 kb on - strand, within PS417_12125at 2631.460 kb on - strand, within PS417_12125at 2631.798 kb on - strandat 2631.995 kb on - strand, within PS417_12130at 2631.995 kb on - strand, within PS417_12130at 2632.034 kb on - strand, within PS417_12130at 2632.147 kb on + strand, within PS417_12130at 2632.148 kb on - strand, within PS417_12130at 2632.148 kb on - strand, within PS417_12130at 2632.279 kb on + strand, within PS417_12130at 2632.280 kb on - strand, within PS417_12130at 2632.435 kb on + strand, within PS417_12130at 2632.786 kb on + strandat 2633.077 kb on + strand, within PS417_12135at 2633.178 kb on + strandat 2633.178 kb on + strandat 2633.397 kb on - strandat 2633.710 kb on - strand, within PS417_12140

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-nophage
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2,631,109 - PS417_12125 0.37 +1.8
2,631,216 + PS417_12125 0.46 +0.6
2,631,418 + PS417_12125 0.63 -0.2
2,631,435 + -0.7
2,631,436 - PS417_12125 0.64 +0.4
2,631,459 + PS417_12125 0.66 -0.3
2,631,459 + PS417_12125 0.66 -0.6
2,631,459 + PS417_12125 0.66 +0.6
2,631,460 - PS417_12125 0.66 -0.6
2,631,460 - PS417_12125 0.66 -1.4
2,631,798 - -0.0
2,631,995 - PS417_12130 0.13 -1.0
2,631,995 - PS417_12130 0.13 -1.1
2,632,034 - PS417_12130 0.17 -0.4
2,632,147 + PS417_12130 0.29 -0.5
2,632,148 - PS417_12130 0.29 +1.2
2,632,148 - PS417_12130 0.29 -0.2
2,632,279 + PS417_12130 0.43 -1.6
2,632,280 - PS417_12130 0.43 -0.9
2,632,435 + PS417_12130 0.60 +0.6
2,632,786 + -0.3
2,633,077 + PS417_12135 0.75 -1.1
2,633,178 + +0.8
2,633,178 + -0.2
2,633,397 - +0.6
2,633,710 - PS417_12140 0.21 -0.6

Or see this region's nucleotide sequence