Strain Fitness in Pseudomonas simiae WCS417 around PS417_11215

Experiment: Time6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11205 and PS417_11210 are separated by 101 nucleotidesPS417_11210 and PS417_11215 are separated by 55 nucleotidesPS417_11215 and PS417_11220 are separated by 87 nucleotides PS417_11205: PS417_11205 - LysR family transcriptional regulator, at 2,403,221 to 2,404,096 _11205 PS417_11210: PS417_11210 - LysR family transcriptional regulator, at 2,404,198 to 2,404,584 _11210 PS417_11215: PS417_11215 - arylesterase, at 2,404,640 to 2,405,458 _11215 PS417_11220: PS417_11220 - signal peptide protein, at 2,405,546 to 2,406,937 _11220 Position (kb) 2404 2405 2406Strain fitness (log2 ratio) -1 0 1 2 3at 2403.729 kb on - strand, within PS417_11205at 2404.271 kb on + strand, within PS417_11210at 2404.931 kb on + strand, within PS417_11215at 2404.993 kb on + strand, within PS417_11215at 2405.065 kb on - strand, within PS417_11215at 2405.149 kb on - strand, within PS417_11215at 2405.251 kb on - strand, within PS417_11215at 2405.251 kb on - strand, within PS417_11215at 2405.422 kb on - strandat 2405.422 kb on - strandat 2405.497 kb on + strandat 2405.526 kb on - strandat 2405.578 kb on - strandat 2405.625 kb on + strandat 2405.671 kb on - strandat 2405.671 kb on - strandat 2405.755 kb on - strand, within PS417_11220at 2405.874 kb on + strand, within PS417_11220at 2406.013 kb on + strandat 2406.016 kb on - strand, within PS417_11220at 2406.171 kb on + strand, within PS417_11220at 2406.192 kb on + strand, within PS417_11220at 2406.201 kb on + strand, within PS417_11220at 2406.201 kb on + strand, within PS417_11220

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Per-strain Table

Position Strand Gene LocusTag Fraction Time6-nophage
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2,403,729 - PS417_11205 0.58 +1.0
2,404,271 + PS417_11210 0.19 -1.4
2,404,931 + PS417_11215 0.36 -1.6
2,404,993 + PS417_11215 0.43 -0.6
2,405,065 - PS417_11215 0.52 -0.2
2,405,149 - PS417_11215 0.62 -0.4
2,405,251 - PS417_11215 0.75 -0.4
2,405,251 - PS417_11215 0.75 -1.5
2,405,422 - -0.7
2,405,422 - +3.6
2,405,497 + +0.5
2,405,526 - +0.6
2,405,578 - +0.8
2,405,625 + +0.3
2,405,671 - +0.7
2,405,671 - -0.6
2,405,755 - PS417_11220 0.15 +1.2
2,405,874 + PS417_11220 0.24 -1.3
2,406,013 + +0.0
2,406,016 - PS417_11220 0.34 -0.1
2,406,171 + PS417_11220 0.45 +0.4
2,406,192 + PS417_11220 0.46 -1.0
2,406,201 + PS417_11220 0.47 -0.6
2,406,201 + PS417_11220 0.47 -0.9

Or see this region's nucleotide sequence