Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0239 and PP_0240 overlap by 4 nucleotides PP_0240 and PP_0241 are separated by 27 nucleotides PP_0241 and PP_0242 are separated by 141 nucleotides PP_0242 and PP_0243 overlap by 1 nucleotides
PP_0239: PP_0239 - aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate, at 293,803 to 294,600
_0239
PP_0240: PP_0240 - Aliphatic sulfonates import ATP-binding protein SsuB, at 294,597 to 295,409
_0240
PP_0241: PP_0241 - Transporter, at 295,437 to 295,652
_0241
PP_0242: PP_0242 - Transcriptional regulator, TetR family, at 295,794 to 296,426
_0242
PP_0243: PP_0243 - Glutamate--cysteine ligase, at 296,426 to 298,003
_0243
Position (kb) 295
296 Strain fitness (log2 ratio) -2
-1
0
1 at 294.476 kb on + strand, within PP_0239 at 294.496 kb on + strand, within PP_0239 at 294.496 kb on + strand, within PP_0239 at 294.497 kb on - strand, within PP_0239 at 294.572 kb on - strand at 294.572 kb on - strand at 295.168 kb on + strand, within PP_0240 at 295.168 kb on + strand, within PP_0240 at 295.169 kb on - strand, within PP_0240 at 295.169 kb on - strand, within PP_0240 at 295.372 kb on + strand at 295.373 kb on - strand at 295.442 kb on + strand at 295.443 kb on - strand at 295.443 kb on - strand at 295.443 kb on - strand at 295.478 kb on + strand, within PP_0241 at 295.479 kb on - strand, within PP_0241 at 295.559 kb on + strand, within PP_0241 at 295.560 kb on - strand, within PP_0241 at 295.637 kb on + strand at 295.637 kb on + strand at 295.828 kb on + strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.840 kb on + strand at 295.841 kb on - strand at 295.841 kb on - strand at 295.915 kb on + strand, within PP_0242 at 295.915 kb on + strand, within PP_0242 at 295.915 kb on + strand, within PP_0242 at 295.915 kb on + strand, within PP_0242 at 295.915 kb on + strand, within PP_0242 at 295.916 kb on - strand, within PP_0242 at 295.916 kb on - strand, within PP_0242 at 295.916 kb on - strand, within PP_0242 at 295.916 kb on - strand, within PP_0242 at 295.916 kb on - strand, within PP_0242 at 295.916 kb on - strand, within PP_0242 at 296.053 kb on - strand, within PP_0242 at 296.110 kb on + strand, within PP_0242 at 296.110 kb on + strand, within PP_0242 at 296.111 kb on - strand, within PP_0242 at 296.111 kb on - strand, within PP_0242 at 296.114 kb on + strand, within PP_0242 at 296.115 kb on - strand, within PP_0242 at 296.115 kb on - strand, within PP_0242 at 296.225 kb on + strand, within PP_0242 at 296.225 kb on + strand, within PP_0242 at 296.226 kb on - strand, within PP_0242 at 296.226 kb on - strand, within PP_0242 at 296.308 kb on + strand, within PP_0242 at 296.308 kb on + strand, within PP_0242 at 296.312 kb on + strand, within PP_0242 at 296.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 294,476 + PP_0239 0.84 -0.6 294,496 + PP_0239 0.87 +0.9 294,496 + PP_0239 0.87 -0.6 294,497 - PP_0239 0.87 -0.3 294,572 - +0.6 294,572 - +0.2 295,168 + PP_0240 0.70 -0.9 295,168 + PP_0240 0.70 +0.3 295,169 - PP_0240 0.70 -0.4 295,169 - PP_0240 0.70 +0.1 295,372 + -0.1 295,373 - +1.0 295,442 + -0.5 295,443 - +0.5 295,443 - +0.3 295,443 - +0.7 295,478 + PP_0241 0.19 -0.1 295,479 - PP_0241 0.19 -0.3 295,559 + PP_0241 0.56 -0.3 295,560 - PP_0241 0.57 -1.9 295,637 + -0.3 295,637 + +0.3 295,828 + +0.5 295,829 - +0.6 295,829 - -0.0 295,840 + +0.1 295,841 - -0.2 295,841 - +0.0 295,915 + PP_0242 0.19 -0.7 295,915 + PP_0242 0.19 +0.7 295,915 + PP_0242 0.19 -0.2 295,915 + PP_0242 0.19 -0.3 295,915 + PP_0242 0.19 +0.9 295,916 - PP_0242 0.19 +0.2 295,916 - PP_0242 0.19 +0.2 295,916 - PP_0242 0.19 -0.1 295,916 - PP_0242 0.19 +0.6 295,916 - PP_0242 0.19 +0.4 295,916 - PP_0242 0.19 +0.7 296,053 - PP_0242 0.41 +0.6 296,110 + PP_0242 0.50 +0.1 296,110 + PP_0242 0.50 +0.1 296,111 - PP_0242 0.50 -0.6 296,111 - PP_0242 0.50 -0.1 296,114 + PP_0242 0.51 +0.2 296,115 - PP_0242 0.51 +0.9 296,115 - PP_0242 0.51 +0.2 296,225 + PP_0242 0.68 +0.5 296,225 + PP_0242 0.68 +0.1 296,226 - PP_0242 0.68 -1.6 296,226 - PP_0242 0.68 -0.1 296,308 + PP_0242 0.81 +0.4 296,308 + PP_0242 0.81 -1.8 296,312 + PP_0242 0.82 +0.5 296,458 - +0.1
Or see this region's nucleotide sequence