Strain Fitness in Escherichia coli BW25113 around b0806

Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM and Betaine 100 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfiu and ybiM are separated by 264 nucleotidesybiM and ybiN are separated by 275 nucleotides b0805: fiu - predicted iron outer membrane transporter (NCBI), at 838,472 to 840,754 fiu b0806: ybiM - orf, hypothetical protein (VIMSS), at 841,019 to 841,279 ybiM b0807: ybiN - orf, hypothetical protein (VIMSS), at 841,555 to 842,481 ybiN Position (kb) 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1at 840.054 kb on - strand, within fiuat 840.279 kb on + strand, within fiuat 840.279 kb on + strand, within fiuat 840.315 kb on + strand, within fiuat 840.315 kb on + strand, within fiuat 840.323 kb on - strand, within fiuat 840.323 kb on - strand, within fiuat 840.323 kb on - strand, within fiuat 840.324 kb on - strand, within fiuat 840.324 kb on - strand, within fiuat 840.361 kb on + strand, within fiuat 840.361 kb on + strand, within fiuat 840.380 kb on - strand, within fiuat 840.436 kb on - strand, within fiuat 840.436 kb on - strand, within fiuat 840.483 kb on - strand, within fiuat 840.539 kb on + strandat 840.539 kb on + strandat 840.820 kb on + strandat 840.832 kb on - strandat 840.832 kb on - strandat 841.192 kb on + strand, within ybiMat 841.223 kb on - strand, within ybiMat 841.327 kb on + strandat 841.327 kb on + strandat 841.546 kb on - strandat 841.559 kb on - strandat 841.559 kb on - strandat 841.559 kb on - strandat 841.658 kb on + strand, within ybiNat 841.678 kb on - strand, within ybiNat 841.682 kb on + strand, within ybiNat 841.689 kb on - strand, within ybiNat 841.769 kb on - strand, within ybiNat 841.792 kb on + strand, within ybiNat 841.976 kb on + strand, within ybiNat 841.979 kb on - strand, within ybiNat 841.986 kb on + strand, within ybiNat 842.073 kb on - strand, within ybiNat 842.220 kb on - strand, within ybiN

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM and Betaine 100 uM
remove
840,054 - fiu b0805 0.69 +0.9
840,279 + fiu b0805 0.79 +0.5
840,279 + fiu b0805 0.79 +0.5
840,315 + fiu b0805 0.81 -0.4
840,315 + fiu b0805 0.81 -0.1
840,323 - fiu b0805 0.81 -0.3
840,323 - fiu b0805 0.81 +0.8
840,323 - fiu b0805 0.81 +0.1
840,324 - fiu b0805 0.81 -0.1
840,324 - fiu b0805 0.81 +0.5
840,361 + fiu b0805 0.83 +0.1
840,361 + fiu b0805 0.83 +0.8
840,380 - fiu b0805 0.84 +0.2
840,436 - fiu b0805 0.86 +0.8
840,436 - fiu b0805 0.86 +0.4
840,483 - fiu b0805 0.88 +0.6
840,539 + -0.1
840,539 + +0.4
840,820 + +0.7
840,832 - -1.1
840,832 - +0.4
841,192 + ybiM b0806 0.66 +0.0
841,223 - ybiM b0806 0.78 +0.7
841,327 + +0.3
841,327 + +0.4
841,546 - -0.5
841,559 - +0.1
841,559 - +0.7
841,559 - +0.2
841,658 + ybiN b0807 0.11 -3.5
841,678 - ybiN b0807 0.13 -0.1
841,682 + ybiN b0807 0.14 -0.1
841,689 - ybiN b0807 0.14 -0.2
841,769 - ybiN b0807 0.23 +0.2
841,792 + ybiN b0807 0.26 +0.4
841,976 + ybiN b0807 0.45 -0.0
841,979 - ybiN b0807 0.46 -0.1
841,986 + ybiN b0807 0.46 -0.0
842,073 - ybiN b0807 0.56 +0.3
842,220 - ybiN b0807 0.72 +0.4

Or see this region's nucleotide sequence