Strain Fitness in Escherichia coli BW25113 around b4692

Experiment: RCH2_defined_1percent_glucose with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntb1146 and ymfL are separated by 43 nucleotidesymfL and ymfM overlap by 4 nucleotidesymfM and oweE are separated by 9 nucleotidesoweE and aaaE are separated by 0 nucleotides b1146: b1146 - orf, hypothetical protein (VIMSS), at 1,202,247 to 1,202,447 b1146 b1147: ymfL - e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq), at 1,202,491 to 1,203,048 ymfL b1148: ymfM - e14 prophage; predicted protein (NCBI), at 1,203,045 to 1,203,383 ymfM b4692: oweE - no description, at 1,203,393 to 1,203,626 oweE b4693: aaaE - no description, at 1,203,627 to 1,204,760 aaaE Position (kb) 1203 1204Strain fitness (log2 ratio) -1 0 1at 1202.825 kb on - strand, within ymfLat 1202.869 kb on - strand, within ymfLat 1202.869 kb on - strand, within ymfLat 1202.897 kb on - strand, within ymfLat 1202.897 kb on - strand, within ymfLat 1202.909 kb on - strand, within ymfLat 1203.060 kb on + strandat 1203.060 kb on + strandat 1203.173 kb on - strand, within ymfMat 1203.180 kb on - strand, within ymfMat 1203.189 kb on - strand, within ymfMat 1203.189 kb on - strand, within ymfMat 1203.378 kb on + strandat 1203.378 kb on + strandat 1203.435 kb on + strand, within oweEat 1203.490 kb on + strand, within oweEat 1203.556 kb on + strand, within oweEat 1203.617 kb on + strandat 1203.617 kb on + strandat 1203.646 kb on - strandat 1203.684 kb on - strandat 1203.684 kb on - strandat 1203.872 kb on + strand, within aaaEat 1203.872 kb on + strand, within aaaEat 1203.872 kb on + strand, within aaaEat 1203.872 kb on + strand, within aaaEat 1203.880 kb on - strand, within aaaEat 1203.891 kb on + strand, within aaaEat 1204.010 kb on + strand, within aaaEat 1204.018 kb on - strand, within aaaEat 1204.078 kb on - strand, within aaaEat 1204.084 kb on + strand, within aaaEat 1204.196 kb on + strand, within aaaEat 1204.204 kb on - strand, within aaaEat 1204.237 kb on - strand, within aaaEat 1204.391 kb on - strand, within aaaEat 1204.420 kb on - strand, within aaaEat 1204.462 kb on + strand, within aaaE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 200 mM
remove
1,202,825 - ymfL b1147 0.60 +0.0
1,202,869 - ymfL b1147 0.68 +1.5
1,202,869 - ymfL b1147 0.68 -0.0
1,202,897 - ymfL b1147 0.73 -1.6
1,202,897 - ymfL b1147 0.73 -0.7
1,202,909 - ymfL b1147 0.75 -0.4
1,203,060 + +0.5
1,203,060 + -0.4
1,203,173 - ymfM b1148 0.38 +0.5
1,203,180 - ymfM b1148 0.40 -1.7
1,203,189 - ymfM b1148 0.42 +0.3
1,203,189 - ymfM b1148 0.42 +0.3
1,203,378 + +0.7
1,203,378 + -0.1
1,203,435 + oweE b4692 0.18 +0.3
1,203,490 + oweE b4692 0.41 +0.9
1,203,556 + oweE b4692 0.70 +0.3
1,203,617 + -0.1
1,203,617 + +0.3
1,203,646 - -0.0
1,203,684 - +0.3
1,203,684 - +0.6
1,203,872 + aaaE b4693 0.22 -0.2
1,203,872 + aaaE b4693 0.22 -0.7
1,203,872 + aaaE b4693 0.22 +0.4
1,203,872 + aaaE b4693 0.22 -0.0
1,203,880 - aaaE b4693 0.22 -0.2
1,203,891 + aaaE b4693 0.23 -0.3
1,204,010 + aaaE b4693 0.34 +0.7
1,204,018 - aaaE b4693 0.34 +0.3
1,204,078 - aaaE b4693 0.40 +0.9
1,204,084 + aaaE b4693 0.40 -0.0
1,204,196 + aaaE b4693 0.50 -0.1
1,204,204 - aaaE b4693 0.51 +0.1
1,204,237 - aaaE b4693 0.54 +0.3
1,204,391 - aaaE b4693 0.67 -0.5
1,204,420 - aaaE b4693 0.70 +0.1
1,204,462 + aaaE b4693 0.74 -0.0

Or see this region's nucleotide sequence