Strain Fitness in Escherichia coli BW25113 around b1763

Experiment: RCH2_defined_1percent_glucose with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb1762 and topB are separated by 127 nucleotidestopB and selD are separated by 4 nucleotides b1762: b1762 - orf, hypothetical protein (VIMSS), at 1,841,855 to 1,842,895 b1762 b1763: topB - DNA topoisomerase III (NCBI), at 1,843,023 to 1,844,984 topB b1764: selD - selenophosphate synthetase (NCBI), at 1,844,989 to 1,846,032 selD Position (kb) 1843 1844 1845Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1842.093 kb on - strand, within b1762at 1842.109 kb on + strand, within b1762at 1842.109 kb on - strand, within b1762at 1842.174 kb on + strand, within b1762at 1842.219 kb on + strand, within b1762at 1842.285 kb on - strand, within b1762at 1842.285 kb on - strand, within b1762at 1842.285 kb on - strand, within b1762at 1842.298 kb on - strand, within b1762at 1842.331 kb on + strand, within b1762at 1842.362 kb on - strand, within b1762at 1842.362 kb on - strand, within b1762at 1842.376 kb on - strand, within b1762at 1842.378 kb on + strand, within b1762at 1842.378 kb on + strand, within b1762at 1842.380 kb on + strand, within b1762at 1842.380 kb on + strand, within b1762at 1842.386 kb on - strand, within b1762at 1842.390 kb on + strand, within b1762at 1842.499 kb on + strand, within b1762at 1842.541 kb on + strand, within b1762at 1842.550 kb on + strand, within b1762at 1842.574 kb on + strand, within b1762at 1842.938 kb on - strandat 1842.938 kb on - strandat 1843.030 kb on - strandat 1843.030 kb on - strandat 1843.036 kb on - strandat 1843.180 kb on + strandat 1843.182 kb on + strandat 1843.714 kb on - strand, within topBat 1844.351 kb on + strand, within topBat 1844.438 kb on + strand, within topBat 1844.443 kb on + strand, within topBat 1844.600 kb on - strand, within topBat 1844.829 kb on - strandat 1845.230 kb on - strand, within selDat 1845.242 kb on - strand, within selDat 1845.254 kb on - strand, within selDat 1845.300 kb on - strand, within selDat 1845.827 kb on - strand, within selDat 1845.827 kb on - strand, within selDat 1845.858 kb on - strand, within selDat 1845.881 kb on - strand, within selDat 1845.883 kb on - strand, within selD

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 200 mM
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1,842,093 - b1762 b1762 0.23 -1.8
1,842,109 + b1762 b1762 0.24 +0.9
1,842,109 - b1762 b1762 0.24 +0.3
1,842,174 + b1762 b1762 0.31 -1.5
1,842,219 + b1762 b1762 0.35 +4.1
1,842,285 - b1762 b1762 0.41 +1.8
1,842,285 - b1762 b1762 0.41 -0.2
1,842,285 - b1762 b1762 0.41 +0.8
1,842,298 - b1762 b1762 0.43 +0.8
1,842,331 + b1762 b1762 0.46 +0.8
1,842,362 - b1762 b1762 0.49 -0.8
1,842,362 - b1762 b1762 0.49 -2.5
1,842,376 - b1762 b1762 0.50 +0.8
1,842,378 + b1762 b1762 0.50 +1.0
1,842,378 + b1762 b1762 0.50 -0.2
1,842,380 + b1762 b1762 0.50 +0.8
1,842,380 + b1762 b1762 0.50 +0.8
1,842,386 - b1762 b1762 0.51 +0.8
1,842,390 + b1762 b1762 0.51 +0.8
1,842,499 + b1762 b1762 0.62 +0.8
1,842,541 + b1762 b1762 0.66 +0.8
1,842,550 + b1762 b1762 0.67 -0.2
1,842,574 + b1762 b1762 0.69 +0.8
1,842,938 - +0.2
1,842,938 - -0.8
1,843,030 - +0.7
1,843,030 - -0.4
1,843,036 - +0.1
1,843,180 + +0.2
1,843,182 + -0.4
1,843,714 - topB b1763 0.35 +1.3
1,844,351 + topB b1763 0.68 -0.3
1,844,438 + topB b1763 0.72 -0.1
1,844,443 + topB b1763 0.72 +0.7
1,844,600 - topB b1763 0.80 +0.7
1,844,829 - -1.0
1,845,230 - selD b1764 0.23 -0.2
1,845,242 - selD b1764 0.24 +0.1
1,845,254 - selD b1764 0.25 -0.0
1,845,300 - selD b1764 0.30 -0.2
1,845,827 - selD b1764 0.80 -0.7
1,845,827 - selD b1764 0.80 +0.2
1,845,858 - selD b1764 0.83 -0.1
1,845,881 - selD b1764 0.85 -0.4
1,845,883 - selD b1764 0.86 -0.2

Or see this region's nucleotide sequence