Strain Fitness in Escherichia coli BW25113 around b2786
Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | RCH2_defined_1percent_glucose with Chloride 100 mM |
---|---|---|---|---|---|
remove | |||||
2,912,087 | + | rumA | b2785 | 0.28 | +0.2 |
2,912,087 | + | rumA | b2785 | 0.28 | -0.1 |
2,912,117 | - | rumA | b2785 | 0.30 | -0.9 |
2,912,168 | + | rumA | b2785 | 0.34 | +1.0 |
2,912,263 | + | rumA | b2785 | 0.42 | -0.2 |
2,912,343 | - | rumA | b2785 | 0.48 | +0.2 |
2,912,387 | + | rumA | b2785 | 0.51 | -0.0 |
2,912,433 | + | rumA | b2785 | 0.55 | +0.2 |
2,912,462 | + | rumA | b2785 | 0.57 | -0.7 |
2,912,465 | - | rumA | b2785 | 0.57 | -0.6 |
2,912,480 | + | rumA | b2785 | 0.58 | -0.0 |
2,912,556 | + | rumA | b2785 | 0.64 | +0.3 |
2,912,559 | + | rumA | b2785 | 0.64 | -0.3 |
2,912,646 | + | rumA | b2785 | 0.71 | +0.1 |
2,912,654 | - | rumA | b2785 | 0.72 | -0.0 |
2,912,668 | + | rumA | b2785 | 0.73 | +0.1 |
2,912,668 | + | rumA | b2785 | 0.73 | +0.8 |
2,912,668 | + | rumA | b2785 | 0.73 | -0.6 |
2,912,668 | + | rumA | b2785 | 0.73 | -0.1 |
2,912,709 | + | rumA | b2785 | 0.76 | +0.3 |
2,912,709 | + | rumA | b2785 | 0.76 | -0.7 |
2,912,709 | - | rumA | b2785 | 0.76 | -0.9 |
2,912,738 | + | rumA | b2785 | 0.78 | -0.5 |
2,912,954 | - | -1.5 | |||
2,912,975 | + | -3.3 | |||
2,912,975 | + | +0.0 | |||
2,912,986 | + | +0.6 | |||
2,913,047 | + | -0.2 | |||
2,913,094 | - | +0.1 | |||
2,913,119 | + | +0.6 | |||
2,913,177 | + | +0.3 | |||
2,913,177 | + | -0.9 | |||
2,913,184 | + | +0.4 | |||
2,913,184 | - | +0.9 | |||
2,913,213 | + | +0.3 | |||
2,913,218 | + | -0.6 | |||
2,913,218 | + | -0.3 | |||
2,913,218 | + | +0.8 | |||
2,913,223 | + | +0.1 | |||
2,913,252 | + | +0.4 | |||
2,913,257 | - | +0.8 | |||
2,913,258 | + | +0.4 | |||
2,913,288 | + | +1.4 | |||
2,913,288 | + | +0.4 | |||
2,913,288 | + | +0.3 | |||
2,913,288 | + | +0.7 | |||
2,913,294 | - | +0.2 | |||
2,913,294 | - | -0.9 | |||
2,913,296 | - | +0.7 | |||
2,913,298 | + | -0.0 | |||
2,913,315 | + | +1.0 | |||
2,913,323 | - | +0.5 | |||
2,913,323 | - | +0.3 | |||
2,913,361 | + | barA | b2786 | 0.10 | +1.1 |
2,913,361 | + | barA | b2786 | 0.10 | -0.7 |
2,913,395 | + | barA | b2786 | 0.11 | -1.0 |
2,913,403 | + | barA | b2786 | 0.12 | +0.1 |
2,913,403 | - | barA | b2786 | 0.12 | +0.1 |
2,913,408 | + | barA | b2786 | 0.12 | +0.5 |
2,913,424 | - | barA | b2786 | 0.13 | -0.1 |
2,913,428 | - | barA | b2786 | 0.13 | +0.2 |
2,913,428 | - | barA | b2786 | 0.13 | +0.8 |
2,913,430 | + | barA | b2786 | 0.13 | +0.4 |
2,913,435 | + | barA | b2786 | 0.13 | +0.6 |
2,913,435 | + | barA | b2786 | 0.13 | +0.7 |
2,913,435 | + | barA | b2786 | 0.13 | +0.6 |
2,913,435 | + | barA | b2786 | 0.13 | +0.3 |
2,913,435 | + | barA | b2786 | 0.13 | +0.8 |
2,913,435 | + | barA | b2786 | 0.13 | +0.1 |
2,913,435 | + | barA | b2786 | 0.13 | +0.9 |
2,913,437 | + | barA | b2786 | 0.13 | +0.8 |
2,913,439 | + | barA | b2786 | 0.13 | -0.1 |
2,913,442 | - | barA | b2786 | 0.13 | +0.7 |
2,913,443 | - | barA | b2786 | 0.13 | +0.3 |
2,913,448 | - | barA | b2786 | 0.13 | +0.6 |
2,913,458 | + | barA | b2786 | 0.14 | +0.9 |
2,913,466 | - | barA | b2786 | 0.14 | -0.1 |
2,913,468 | + | barA | b2786 | 0.14 | -0.1 |
2,913,468 | + | barA | b2786 | 0.14 | +0.1 |
2,913,478 | - | barA | b2786 | 0.14 | +0.8 |
2,913,478 | - | barA | b2786 | 0.14 | +0.9 |
2,913,478 | - | barA | b2786 | 0.14 | +0.8 |
2,913,478 | - | barA | b2786 | 0.14 | +0.5 |
2,913,490 | + | barA | b2786 | 0.15 | +0.7 |
2,913,494 | - | barA | b2786 | 0.15 | +0.2 |
2,913,495 | + | barA | b2786 | 0.15 | +0.2 |
2,913,498 | + | barA | b2786 | 0.15 | +0.5 |
2,913,513 | + | barA | b2786 | 0.16 | -0.0 |
2,913,518 | + | barA | b2786 | 0.16 | +0.6 |
2,913,518 | + | barA | b2786 | 0.16 | +0.7 |
2,913,526 | - | barA | b2786 | 0.16 | +1.3 |
2,913,549 | + | barA | b2786 | 0.17 | +0.6 |
2,913,580 | - | barA | b2786 | 0.18 | +0.6 |
2,913,580 | - | barA | b2786 | 0.18 | +0.5 |
2,913,587 | + | barA | b2786 | 0.18 | +0.3 |
2,913,594 | - | barA | b2786 | 0.19 | -0.0 |
2,913,643 | + | barA | b2786 | 0.20 | +1.0 |
2,913,675 | - | barA | b2786 | 0.22 | +0.3 |
2,913,675 | - | barA | b2786 | 0.22 | +1.2 |
2,913,680 | + | barA | b2786 | 0.22 | -1.4 |
2,913,680 | + | barA | b2786 | 0.22 | -0.5 |
2,913,682 | + | barA | b2786 | 0.22 | +0.9 |
2,913,682 | + | barA | b2786 | 0.22 | +0.6 |
2,913,688 | - | barA | b2786 | 0.22 | -0.6 |
2,913,688 | - | barA | b2786 | 0.22 | +0.9 |
2,913,688 | - | barA | b2786 | 0.22 | +1.5 |
2,913,688 | - | barA | b2786 | 0.22 | +0.4 |
2,913,702 | - | barA | b2786 | 0.23 | +0.6 |
2,913,702 | - | barA | b2786 | 0.23 | +0.5 |
2,913,703 | + | barA | b2786 | 0.23 | +0.7 |
2,913,703 | + | barA | b2786 | 0.23 | +0.4 |
2,913,705 | + | barA | b2786 | 0.23 | -0.0 |
2,913,705 | + | barA | b2786 | 0.23 | +0.4 |
2,913,713 | - | barA | b2786 | 0.23 | -0.2 |
2,913,713 | - | barA | b2786 | 0.23 | +0.1 |
2,913,713 | - | barA | b2786 | 0.23 | +0.1 |
2,913,720 | - | barA | b2786 | 0.23 | +0.4 |
2,913,721 | - | barA | b2786 | 0.23 | +1.2 |
2,913,721 | - | barA | b2786 | 0.23 | -0.0 |
2,913,739 | + | barA | b2786 | 0.24 | +0.4 |
2,913,739 | + | barA | b2786 | 0.24 | +0.4 |
2,913,739 | + | barA | b2786 | 0.24 | -0.8 |
2,913,744 | - | barA | b2786 | 0.24 | +1.1 |
2,913,744 | - | barA | b2786 | 0.24 | +0.8 |
2,913,747 | - | barA | b2786 | 0.24 | +2.6 |
2,913,747 | - | barA | b2786 | 0.24 | +0.0 |
2,913,747 | - | barA | b2786 | 0.24 | -0.3 |
2,913,766 | - | barA | b2786 | 0.25 | +0.5 |
2,913,782 | - | barA | b2786 | 0.25 | -0.0 |
2,913,813 | + | barA | b2786 | 0.27 | +0.9 |
2,913,836 | - | barA | b2786 | 0.27 | +1.2 |
2,913,836 | - | barA | b2786 | 0.27 | +0.7 |
2,913,848 | + | barA | b2786 | 0.28 | +0.1 |
2,913,848 | + | barA | b2786 | 0.28 | +1.0 |
2,913,848 | + | barA | b2786 | 0.28 | +1.1 |
2,913,848 | + | barA | b2786 | 0.28 | +0.8 |
2,913,858 | + | barA | b2786 | 0.28 | +1.2 |
2,913,858 | + | barA | b2786 | 0.28 | +0.7 |
2,913,863 | + | barA | b2786 | 0.28 | +0.5 |
2,913,863 | + | barA | b2786 | 0.28 | +0.2 |
2,913,910 | + | barA | b2786 | 0.30 | +0.1 |
2,913,910 | + | barA | b2786 | 0.30 | -0.1 |
2,913,933 | + | barA | b2786 | 0.31 | +0.3 |
2,913,933 | + | barA | b2786 | 0.31 | +0.1 |
2,913,935 | + | barA | b2786 | 0.31 | +0.8 |
2,913,935 | + | barA | b2786 | 0.31 | +0.8 |
2,913,983 | - | barA | b2786 | 0.33 | -0.2 |
2,913,984 | - | barA | b2786 | 0.33 | +0.0 |
2,913,985 | + | barA | b2786 | 0.33 | +0.8 |
2,913,987 | + | barA | b2786 | 0.33 | +0.8 |
2,913,990 | + | barA | b2786 | 0.33 | +1.2 |
2,913,990 | + | barA | b2786 | 0.33 | +1.5 |
2,913,990 | + | barA | b2786 | 0.33 | +0.4 |
2,913,990 | + | barA | b2786 | 0.33 | +1.2 |
2,913,990 | + | barA | b2786 | 0.33 | +0.1 |
2,913,990 | + | barA | b2786 | 0.33 | +0.8 |
2,913,997 | + | barA | b2786 | 0.33 | +0.5 |
2,913,997 | - | barA | b2786 | 0.33 | +1.0 |
2,913,998 | - | barA | b2786 | 0.33 | +1.1 |
2,913,998 | - | barA | b2786 | 0.33 | +0.9 |
2,913,999 | + | barA | b2786 | 0.33 | +0.6 |
2,914,000 | - | barA | b2786 | 0.33 | +0.9 |
2,914,000 | - | barA | b2786 | 0.33 | +0.6 |
2,914,000 | - | barA | b2786 | 0.33 | +0.5 |
2,914,000 | - | barA | b2786 | 0.33 | +1.0 |
2,914,002 | + | barA | b2786 | 0.33 | +0.4 |
2,914,002 | + | barA | b2786 | 0.33 | +0.3 |
2,914,002 | + | barA | b2786 | 0.33 | +0.6 |
2,914,002 | + | barA | b2786 | 0.33 | +0.8 |
2,914,005 | - | barA | b2786 | 0.34 | +0.5 |
2,914,017 | - | barA | b2786 | 0.34 | +0.3 |
2,914,017 | - | barA | b2786 | 0.34 | +0.7 |
2,914,017 | - | barA | b2786 | 0.34 | -0.3 |
2,914,018 | - | barA | b2786 | 0.34 | +0.8 |
2,914,018 | - | barA | b2786 | 0.34 | +0.6 |
2,914,019 | - | barA | b2786 | 0.34 | +1.1 |
2,914,023 | - | barA | b2786 | 0.34 | +0.5 |
2,914,049 | + | barA | b2786 | 0.35 | +1.4 |
2,914,049 | + | barA | b2786 | 0.35 | +1.1 |
2,914,061 | + | barA | b2786 | 0.36 | -1.0 |
2,914,068 | + | barA | b2786 | 0.36 | +0.6 |
2,914,068 | + | barA | b2786 | 0.36 | +0.9 |
2,914,071 | + | barA | b2786 | 0.36 | +0.6 |
2,914,079 | - | barA | b2786 | 0.36 | +0.2 |
2,914,086 | - | barA | b2786 | 0.37 | +0.6 |
2,914,112 | + | barA | b2786 | 0.37 | -0.1 |
2,914,135 | + | barA | b2786 | 0.38 | +1.6 |
2,914,145 | - | barA | b2786 | 0.39 | -0.2 |
2,914,153 | - | barA | b2786 | 0.39 | +0.7 |
2,914,153 | - | barA | b2786 | 0.39 | +0.6 |
2,914,166 | - | barA | b2786 | 0.39 | +0.2 |
2,914,173 | + | barA | b2786 | 0.40 | +1.2 |
2,914,177 | + | barA | b2786 | 0.40 | +0.0 |
2,914,177 | + | barA | b2786 | 0.40 | +0.3 |
2,914,182 | + | barA | b2786 | 0.40 | +0.5 |
2,914,182 | + | barA | b2786 | 0.40 | +1.0 |
2,914,182 | + | barA | b2786 | 0.40 | -0.3 |
2,914,187 | + | barA | b2786 | 0.40 | -1.0 |
2,914,188 | - | barA | b2786 | 0.40 | +1.1 |
2,914,188 | - | barA | b2786 | 0.40 | +0.2 |
2,914,188 | - | barA | b2786 | 0.40 | +0.4 |
2,914,190 | + | barA | b2786 | 0.40 | +1.4 |
2,914,190 | + | barA | b2786 | 0.40 | +0.7 |
2,914,190 | - | barA | b2786 | 0.40 | +0.6 |
2,914,190 | - | barA | b2786 | 0.40 | +0.8 |
2,914,194 | + | barA | b2786 | 0.40 | +1.1 |
2,914,194 | + | barA | b2786 | 0.40 | +0.1 |
2,914,197 | - | barA | b2786 | 0.41 | +0.2 |
2,914,198 | - | barA | b2786 | 0.41 | +0.2 |
2,914,198 | - | barA | b2786 | 0.41 | +0.3 |
2,914,198 | - | barA | b2786 | 0.41 | +0.2 |
2,914,200 | + | barA | b2786 | 0.41 | -0.1 |
2,914,202 | + | barA | b2786 | 0.41 | +0.9 |
2,914,202 | + | barA | b2786 | 0.41 | -0.5 |
2,914,202 | + | barA | b2786 | 0.41 | -0.0 |
2,914,202 | - | barA | b2786 | 0.41 | +0.8 |
2,914,202 | - | barA | b2786 | 0.41 | -0.2 |
2,914,202 | - | barA | b2786 | 0.41 | +0.0 |
2,914,208 | - | barA | b2786 | 0.41 | +0.1 |
2,914,210 | + | barA | b2786 | 0.41 | +0.0 |
2,914,210 | + | barA | b2786 | 0.41 | -0.3 |
2,914,210 | - | barA | b2786 | 0.41 | +1.1 |
2,914,210 | - | barA | b2786 | 0.41 | +1.1 |
2,914,210 | - | barA | b2786 | 0.41 | +2.9 |
2,914,212 | + | +1.1 | |||
2,914,212 | + | barA | b2786 | 0.41 | -2.6 |
2,914,213 | - | barA | b2786 | 0.41 | +0.0 |
2,914,213 | - | barA | b2786 | 0.41 | +0.0 |
2,914,213 | - | barA | b2786 | 0.41 | -0.2 |
2,914,213 | - | barA | b2786 | 0.41 | +0.5 |
2,914,220 | - | barA | b2786 | 0.41 | +0.5 |
2,914,225 | + | barA | b2786 | 0.42 | -0.0 |
2,914,231 | - | barA | b2786 | 0.42 | +0.1 |
2,914,231 | - | barA | b2786 | 0.42 | +0.4 |
2,914,233 | - | barA | b2786 | 0.42 | +0.5 |
2,914,238 | + | barA | b2786 | 0.42 | +0.6 |
2,914,265 | - | barA | b2786 | 0.43 | +0.7 |
2,914,274 | + | barA | b2786 | 0.43 | +0.2 |
2,914,274 | + | barA | b2786 | 0.43 | +0.2 |
2,914,286 | + | barA | b2786 | 0.44 | +0.8 |
2,914,286 | + | barA | b2786 | 0.44 | -0.3 |
2,914,287 | + | barA | b2786 | 0.44 | +0.6 |
2,914,296 | + | barA | b2786 | 0.44 | -0.2 |
2,914,296 | + | barA | b2786 | 0.44 | -0.2 |
2,914,301 | + | barA | b2786 | 0.44 | +0.3 |
2,914,324 | - | barA | b2786 | 0.45 | +0.5 |
2,914,331 | - | barA | b2786 | 0.45 | +0.9 |
2,914,332 | - | barA | b2786 | 0.45 | +0.9 |
2,914,332 | - | barA | b2786 | 0.45 | +0.9 |
2,914,372 | - | barA | b2786 | 0.47 | +0.9 |
2,914,390 | + | barA | b2786 | 0.48 | +0.3 |
2,914,408 | - | barA | b2786 | 0.48 | +1.1 |
2,914,423 | + | barA | b2786 | 0.49 | +0.6 |
2,914,423 | + | barA | b2786 | 0.49 | +0.5 |
2,914,434 | + | barA | b2786 | 0.49 | +0.5 |
2,914,434 | + | barA | b2786 | 0.49 | -0.1 |
2,914,436 | + | barA | b2786 | 0.49 | -0.3 |
2,914,436 | + | barA | b2786 | 0.49 | -0.8 |
2,914,479 | - | barA | b2786 | 0.51 | +0.5 |
2,914,507 | - | barA | b2786 | 0.52 | -0.2 |
2,914,533 | - | barA | b2786 | 0.53 | +0.4 |
2,914,533 | - | barA | b2786 | 0.53 | +0.9 |
2,914,534 | - | barA | b2786 | 0.53 | +0.6 |
2,914,534 | - | barA | b2786 | 0.53 | -0.0 |
2,914,534 | - | barA | b2786 | 0.53 | +0.5 |
2,914,546 | - | barA | b2786 | 0.53 | +0.2 |
2,914,631 | - | barA | b2786 | 0.56 | +0.6 |
2,914,647 | + | barA | b2786 | 0.57 | +0.5 |
2,914,669 | + | barA | b2786 | 0.58 | +0.6 |
2,914,669 | + | barA | b2786 | 0.58 | +0.4 |
2,914,692 | - | barA | b2786 | 0.59 | +0.8 |
2,914,692 | - | barA | b2786 | 0.59 | +1.1 |
2,914,703 | - | barA | b2786 | 0.59 | -0.1 |
2,914,803 | - | barA | b2786 | 0.63 | +0.7 |
2,914,803 | - | barA | b2786 | 0.63 | +0.5 |
2,914,844 | - | barA | b2786 | 0.64 | +0.8 |
2,914,844 | - | barA | b2786 | 0.64 | +1.0 |
2,914,935 | - | barA | b2786 | 0.67 | +0.5 |
2,914,984 | + | barA | b2786 | 0.69 | -0.4 |
2,914,984 | + | barA | b2786 | 0.69 | +0.1 |
2,915,070 | - | barA | b2786 | 0.72 | +0.4 |
2,915,070 | - | barA | b2786 | 0.72 | +0.9 |
2,915,313 | + | barA | b2786 | 0.81 | +0.9 |
2,915,313 | + | barA | b2786 | 0.81 | +0.3 |
2,915,336 | - | barA | b2786 | 0.82 | +0.6 |
2,915,397 | - | barA | b2786 | 0.84 | +0.1 |
2,915,682 | + | +0.2 | |||
2,915,739 | + | +0.1 | |||
2,915,796 | + | +0.2 | |||
2,915,796 | + | +1.1 | |||
2,915,912 | - | +0.1 | |||
2,916,093 | - | -0.2 | |||
2,916,093 | - | -0.8 | |||
2,916,121 | + | -0.1 | |||
2,916,147 | + | +0.1 | |||
2,916,147 | + | +0.1 | |||
2,916,190 | - | -0.5 | |||
2,916,190 | - | -0.0 | |||
2,916,237 | + | gudD | b2787 | 0.13 | -0.4 |
2,916,241 | - | gudD | b2787 | 0.13 | +0.2 |
2,916,307 | - | gudD | b2787 | 0.18 | +0.0 |
2,916,330 | - | gudD | b2787 | 0.20 | +0.1 |
2,916,333 | + | gudD | b2787 | 0.20 | +0.2 |
2,916,381 | + | gudD | b2787 | 0.23 | -0.2 |
2,916,398 | + | gudD | b2787 | 0.25 | -0.6 |
2,916,398 | + | gudD | b2787 | 0.25 | -0.3 |
2,916,401 | - | gudD | b2787 | 0.25 | -1.0 |
2,916,463 | - | gudD | b2787 | 0.30 | -0.2 |
2,916,463 | - | gudD | b2787 | 0.30 | -0.2 |
2,916,463 | - | gudD | b2787 | 0.30 | +0.1 |
2,916,561 | - | gudD | b2787 | 0.37 | -0.1 |
Or see this region's nucleotide sequence