Strain Fitness in Escherichia coli BW25113 around b1936

Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntintG and fliE are separated by 36 nucleotidesfliE and fliF are separated by 214 nucleotides b1936: intG - predicted defective phage integrase (pseudogene) (RefSeq), at 2,010,526 to 2,010,687 intG b1937: fliE - flagellar hook-basal body protein FliE (NCBI), at 2,010,724 to 2,011,038 fliE b1938: fliF - flagellar M-ring protein (NCBI), at 2,011,253 to 2,012,911 fliF Position (kb) 2010 2011Strain fitness (log2 ratio) -2 -1 0 1at 2009.794 kb on + strandat 2010.417 kb on - strandat 2010.449 kb on - strandat 2010.511 kb on - strandat 2010.520 kb on - strandat 2010.530 kb on - strandat 2010.530 kb on - strandat 2010.547 kb on + strand, within intGat 2010.555 kb on - strand, within intGat 2010.629 kb on - strand, within intGat 2010.673 kb on + strandat 2011.024 kb on + strandat 2011.097 kb on - strandat 2011.163 kb on - strandat 2011.228 kb on + strandat 2011.236 kb on - strandat 2011.367 kb on + strandat 2011.626 kb on - strand, within fliFat 2011.626 kb on - strand, within fliF

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM
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2,009,794 + -0.3
2,010,417 - +1.0
2,010,449 - +0.2
2,010,511 - +1.0
2,010,520 - +0.7
2,010,530 - +0.1
2,010,530 - +0.3
2,010,547 + intG b1936 0.13 +1.0
2,010,555 - intG b1936 0.18 +1.6
2,010,629 - intG b1936 0.64 +1.5
2,010,673 + -0.8
2,011,024 + +0.7
2,011,097 - +0.4
2,011,163 - +0.8
2,011,228 + -0.4
2,011,236 - -1.8
2,011,367 + -0.2
2,011,626 - fliF b1938 0.22 +0.4
2,011,626 - fliF b1938 0.22 +0.1

Or see this region's nucleotide sequence