Strain Fitness in Escherichia coli BW25113 around b1575

Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydfA and ydfB are separated by 1 nucleotidesydfB and ydfC are separated by 29 nucleotidesydfC and dicF are separated by 340 nucleotidesdicF and dicB are separated by 174 nucleotidesdicB and ydfD overlap by 4 nucleotidesydfD and ydfE are separated by 92 nucleotides b1571: ydfA - Qin prophage; predicted protein (NCBI), at 1,646,532 to 1,646,687 ydfA b1572: ydfB - orf, hypothetical protein (VIMSS), at 1,646,689 to 1,646,817 ydfB b1573: ydfC - Qin prophage; predicted protein (RefSeq), at 1,646,847 to 1,647,065 ydfC b1574: dicF - antisense RNA DicF (NCBI), at 1,647,406 to 1,647,458 dicF b1575: dicB - Qin prophage; cell division inhibition protein (NCBI), at 1,647,633 to 1,647,821 dicB b1576: ydfD - Qin prophage; predicted protein (NCBI), at 1,647,818 to 1,648,009 ydfD b1577: ydfE - Qin prophage; predicted protein (RefSeq), at 1,648,102 to 1,648,866 ydfE Position (kb) 1647 1648Strain fitness (log2 ratio) -1 0 1 2 3at 1646.751 kb on - strand, within ydfBat 1646.887 kb on - strand, within ydfCat 1646.997 kb on - strand, within ydfCat 1647.366 kb on - strandat 1647.500 kb on - strandat 1647.653 kb on + strand, within dicBat 1647.700 kb on + strand, within dicBat 1647.709 kb on + strand, within dicBat 1647.775 kb on - strand, within dicBat 1647.880 kb on - strand, within ydfDat 1647.900 kb on - strand, within ydfDat 1647.957 kb on - strand, within ydfDat 1648.158 kb on - strandat 1648.158 kb on - strandat 1648.173 kb on + strandat 1648.173 kb on + strandat 1648.176 kb on - strandat 1648.176 kb on - strandat 1648.191 kb on - strand, within ydfEat 1648.250 kb on - strand, within ydfEat 1648.252 kb on + strand, within ydfEat 1648.260 kb on - strand, within ydfEat 1648.260 kb on - strand, within ydfEat 1648.260 kb on - strand, within ydfEat 1648.260 kb on - strand, within ydfEat 1648.297 kb on + strand, within ydfEat 1648.301 kb on - strand, within ydfEat 1648.301 kb on - strand, within ydfEat 1648.305 kb on - strand, within ydfEat 1648.306 kb on + strand, within ydfEat 1648.333 kb on + strand, within ydfEat 1648.357 kb on + strand, within ydfEat 1648.391 kb on - strand, within ydfEat 1648.391 kb on - strand, within ydfEat 1648.446 kb on - strand, within ydfEat 1648.725 kb on + strand, within ydfE

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM
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1,646,751 - ydfB b1572 0.48 -0.0
1,646,887 - ydfC b1573 0.18 -0.2
1,646,997 - ydfC b1573 0.68 +0.3
1,647,366 - +0.0
1,647,500 - +0.8
1,647,653 + dicB b1575 0.11 +1.1
1,647,700 + dicB b1575 0.35 +0.0
1,647,709 + dicB b1575 0.40 +0.7
1,647,775 - dicB b1575 0.75 +0.8
1,647,880 - ydfD b1576 0.32 +0.8
1,647,900 - ydfD b1576 0.43 +0.8
1,647,957 - ydfD b1576 0.72 +0.8
1,648,158 - +0.4
1,648,158 - -1.2
1,648,173 + -1.2
1,648,173 + -1.5
1,648,176 - +3.2
1,648,176 - -1.3
1,648,191 - ydfE b1577 0.12 -0.9
1,648,250 - ydfE b1577 0.19 -0.5
1,648,252 + ydfE b1577 0.20 -1.1
1,648,260 - ydfE b1577 0.21 +0.3
1,648,260 - ydfE b1577 0.21 -0.0
1,648,260 - ydfE b1577 0.21 +0.4
1,648,260 - ydfE b1577 0.21 +0.3
1,648,297 + ydfE b1577 0.25 +0.4
1,648,301 - ydfE b1577 0.26 +0.1
1,648,301 - ydfE b1577 0.26 +0.2
1,648,305 - ydfE b1577 0.27 +0.5
1,648,306 + ydfE b1577 0.27 -0.4
1,648,333 + ydfE b1577 0.30 -1.0
1,648,357 + ydfE b1577 0.33 +0.3
1,648,391 - ydfE b1577 0.38 +0.5
1,648,391 - ydfE b1577 0.38 +0.5
1,648,446 - ydfE b1577 0.45 +0.1
1,648,725 + ydfE b1577 0.81 +0.3

Or see this region's nucleotide sequence