Strain Fitness in Pseudomonas simiae WCS417 around PS417_00385

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00375 and PS417_00380 overlap by 8 nucleotidesPS417_00380 and PS417_00385 overlap by 1 nucleotidesPS417_00385 and PS417_00390 are separated by 67 nucleotides PS417_00375: PS417_00375 - membrane protein, at 73,464 to 74,252 _00375 PS417_00380: PS417_00380 - zinc ABC transporter ATP-binding protein, at 74,245 to 75,030 _00380 PS417_00385: PS417_00385 - Fur family transcriptional regulator, at 75,030 to 75,512 _00385 PS417_00390: PS417_00390 - ABC transporter substrate-binding protein, at 75,580 to 76,500 _00390 Position (kb) 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1at 74.155 kb on + strand, within PS417_00375at 74.262 kb on + strandat 74.348 kb on + strand, within PS417_00380at 74.550 kb on - strandat 74.550 kb on - strand, within PS417_00380at 75.347 kb on - strand, within PS417_00385at 75.543 kb on - strandat 75.545 kb on + strandat 75.546 kb on - strandat 75.660 kb on - strandat 75.756 kb on + strand, within PS417_00390at 75.756 kb on + strand, within PS417_00390at 75.757 kb on - strand, within PS417_00390at 75.760 kb on + strand, within PS417_00390at 75.760 kb on + strand, within PS417_00390at 75.761 kb on - strand, within PS417_00390at 76.099 kb on - strand, within PS417_00390at 76.174 kb on + strand, within PS417_00390at 76.259 kb on + strand, within PS417_00390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
remove
74,155 + PS417_00375 0.88 -0.7
74,262 + -0.4
74,348 + PS417_00380 0.13 -0.2
74,550 - +1.7
74,550 - PS417_00380 0.39 -0.5
75,347 - PS417_00385 0.66 -2.8
75,543 - -0.4
75,545 + -1.8
75,546 - -0.8
75,660 - -0.5
75,756 + PS417_00390 0.19 -1.3
75,756 + PS417_00390 0.19 -0.9
75,757 - PS417_00390 0.19 -0.1
75,760 + PS417_00390 0.20 -0.1
75,760 + PS417_00390 0.20 -0.9
75,761 - PS417_00390 0.20 +0.2
76,099 - PS417_00390 0.56 -0.7
76,174 + PS417_00390 0.64 -0.9
76,259 + PS417_00390 0.74 -0.9

Or see this region's nucleotide sequence