Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03140 and PS417_03145 are separated by 114 nucleotides PS417_03145 and PS417_03150 are separated by 124 nucleotides
PS417_03140: PS417_03140 - 3-ketoacyl-ACP reductase, at 720,409 to 721,752
_03140
PS417_03145: PS417_03145 - acetyl-CoA acetyltransferase, at 721,867 to 723,144
_03145
PS417_03150: PS417_03150 - kinase, at 723,269 to 724,165
_03150
Position (kb)
721
722
723
724 Strain fitness (log2 ratio)
-1
0
1 at 721.194 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.547 kb on + strand, within PS417_03140 at 721.553 kb on + strand, within PS417_03140 at 721.553 kb on + strand, within PS417_03140 at 721.554 kb on - strand, within PS417_03140 at 721.738 kb on - strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.887 kb on - strand at 721.997 kb on - strand, within PS417_03145 at 722.673 kb on - strand, within PS417_03145 at 722.851 kb on + strand, within PS417_03145 at 722.985 kb on + strand, within PS417_03145 at 723.037 kb on - strand at 723.037 kb on - strand at 723.037 kb on - strand at 723.153 kb on + strand at 723.168 kb on + strand at 723.216 kb on + strand at 723.217 kb on - strand at 723.217 kb on - strand at 723.231 kb on - strand at 723.237 kb on - strand at 723.247 kb on - strand at 723.280 kb on + strand at 723.280 kb on + strand at 723.281 kb on - strand at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.363 kb on - strand, within PS417_03150 at 723.621 kb on + strand, within PS417_03150 at 723.621 kb on + strand, within PS417_03150 at 723.685 kb on - strand, within PS417_03150 at 723.838 kb on - strand, within PS417_03150 at 723.903 kb on - strand, within PS417_03150 at 723.966 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 remove 721,194 + PS417_03140 0.58 -0.7 721,196 + PS417_03140 0.59 -0.4 721,196 + PS417_03140 0.59 -0.1 721,196 + PS417_03140 0.59 +0.6 721,197 - PS417_03140 0.59 -1.1 721,197 - PS417_03140 0.59 +0.1 721,197 - PS417_03140 0.59 -0.1 721,547 + PS417_03140 0.85 -0.3 721,553 + PS417_03140 0.85 -1.6 721,553 + PS417_03140 0.85 -0.5 721,554 - PS417_03140 0.85 -0.3 721,738 - +1.1 721,739 + +0.3 721,739 + +0.2 721,887 - +1.4 721,997 - PS417_03145 0.10 -0.4 722,673 - PS417_03145 0.63 -1.1 722,851 + PS417_03145 0.77 +0.2 722,985 + PS417_03145 0.87 -0.6 723,037 - +0.1 723,037 - -0.0 723,037 - +0.0 723,153 + +0.9 723,168 + -0.2 723,216 + -0.5 723,217 - -0.0 723,217 - -0.4 723,231 - -1.3 723,237 - -0.3 723,247 - -0.2 723,280 + +0.2 723,280 + -0.4 723,281 - +0.7 723,362 + PS417_03150 0.10 -0.2 723,362 + PS417_03150 0.10 -1.4 723,362 + PS417_03150 0.10 -0.3 723,362 + PS417_03150 0.10 +0.1 723,362 + PS417_03150 0.10 -0.2 723,363 - PS417_03150 0.10 +0.7 723,621 + PS417_03150 0.39 -1.4 723,621 + PS417_03150 0.39 -0.1 723,685 - PS417_03150 0.46 +1.1 723,838 - PS417_03150 0.63 -0.1 723,903 - PS417_03150 0.71 -0.1 723,966 - PS417_03150 0.78 +0.5 723,997 - PS417_03150 0.81 +0.1 723,997 - PS417_03150 0.81 -0.1
Or see this region's nucleotide sequence