Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23590 and PS417_23595 are separated by 29 nucleotides PS417_23595 and PS417_23600 are separated by 1 nucleotides PS417_23600 and PS417_23605 are separated by 12 nucleotides
PS417_23590: PS417_23590 - bleomycin resistance protein, at 5,102,232 to 5,102,600
_23590
PS417_23595: PS417_23595 - D-aminoacylase, at 5,102,630 to 5,104,093
_23595
PS417_23600: PS417_23600 - RpiR family transcriptional regulator, at 5,104,095 to 5,104,955
_23600
PS417_23605: PS417_23605 - permease DsdX, at 5,104,968 to 5,106,371
_23605
Position (kb) 5102
5103
5104
5105 Strain fitness (log2 ratio) -2
-1
0
1 at 5101.725 kb on + strand at 5101.725 kb on + strand at 5101.726 kb on - strand at 5101.726 kb on - strand at 5101.726 kb on - strand at 5101.741 kb on - strand at 5101.741 kb on - strand at 5101.746 kb on + strand at 5101.747 kb on - strand at 5101.772 kb on + strand at 5101.875 kb on + strand at 5101.878 kb on + strand at 5101.925 kb on + strand at 5101.926 kb on - strand at 5101.928 kb on + strand at 5101.928 kb on + strand at 5101.929 kb on - strand at 5102.033 kb on + strand at 5102.053 kb on + strand at 5102.473 kb on + strand, within PS417_23590 at 5102.474 kb on - strand, within PS417_23590 at 5102.474 kb on - strand, within PS417_23590 at 5102.536 kb on + strand, within PS417_23590 at 5102.633 kb on + strand at 5102.633 kb on + strand at 5102.634 kb on - strand at 5102.634 kb on - strand at 5102.715 kb on + strand at 5102.716 kb on - strand at 5102.750 kb on - strand at 5102.750 kb on - strand at 5103.076 kb on - strand, within PS417_23595 at 5103.095 kb on + strand, within PS417_23595 at 5103.252 kb on + strand, within PS417_23595 at 5103.322 kb on + strand, within PS417_23595 at 5103.364 kb on + strand, within PS417_23595 at 5103.456 kb on + strand, within PS417_23595 at 5103.457 kb on - strand, within PS417_23595 at 5103.640 kb on + strand, within PS417_23595 at 5103.641 kb on - strand, within PS417_23595 at 5103.641 kb on - strand, within PS417_23595 at 5103.662 kb on - strand, within PS417_23595 at 5104.029 kb on - strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.032 kb on + strand at 5104.086 kb on + strand at 5104.087 kb on - strand at 5104.093 kb on + strand at 5104.257 kb on - strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.258 kb on + strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.259 kb on - strand, within PS417_23600 at 5104.262 kb on + strand, within PS417_23600 at 5104.358 kb on - strand, within PS417_23600 at 5104.398 kb on - strand, within PS417_23600 at 5104.991 kb on - strand at 5105.066 kb on + strand at 5105.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 remove 5,101,725 + -0.0 5,101,725 + +0.3 5,101,726 - -0.3 5,101,726 - -0.3 5,101,726 - +0.0 5,101,741 - +0.1 5,101,741 - +0.1 5,101,746 + +0.1 5,101,747 - -0.2 5,101,772 + -0.2 5,101,875 + +0.2 5,101,878 + -0.1 5,101,925 + -0.1 5,101,926 - -0.2 5,101,928 + -0.4 5,101,928 + +0.1 5,101,929 - +0.2 5,102,033 + +0.1 5,102,053 + -0.0 5,102,473 + PS417_23590 0.65 +0.1 5,102,474 - PS417_23590 0.66 -0.7 5,102,474 - PS417_23590 0.66 +0.3 5,102,536 + PS417_23590 0.82 +0.4 5,102,633 + +0.4 5,102,633 + +0.3 5,102,634 - -0.1 5,102,634 - +1.4 5,102,715 + +0.5 5,102,716 - -0.1 5,102,750 - +0.1 5,102,750 - -0.1 5,103,076 - PS417_23595 0.30 +0.4 5,103,095 + PS417_23595 0.32 +0.7 5,103,252 + PS417_23595 0.42 +0.9 5,103,322 + PS417_23595 0.47 +0.5 5,103,364 + PS417_23595 0.50 +1.1 5,103,456 + PS417_23595 0.56 -0.2 5,103,457 - PS417_23595 0.56 -0.1 5,103,640 + PS417_23595 0.69 +0.3 5,103,641 - PS417_23595 0.69 -0.6 5,103,641 - PS417_23595 0.69 -1.6 5,103,662 - PS417_23595 0.70 +1.4 5,104,029 - -0.8 5,104,032 + +0.6 5,104,032 + -0.5 5,104,032 + +0.3 5,104,032 + +0.9 5,104,032 + +0.4 5,104,086 + -1.3 5,104,087 - -2.4 5,104,093 + -0.1 5,104,257 - PS417_23600 0.19 +0.1 5,104,258 + PS417_23600 0.19 -0.0 5,104,258 + +0.4 5,104,258 + PS417_23600 0.19 -0.4 5,104,258 + PS417_23600 0.19 -1.5 5,104,258 + PS417_23600 0.19 +0.8 5,104,258 + PS417_23600 0.19 -0.1 5,104,259 - PS417_23600 0.19 +0.0 5,104,259 - PS417_23600 0.19 +1.5 5,104,259 - PS417_23600 0.19 -0.6 5,104,259 - PS417_23600 0.19 -0.1 5,104,262 + PS417_23600 0.19 -0.5 5,104,358 - PS417_23600 0.31 -0.3 5,104,398 - PS417_23600 0.35 -1.1 5,104,991 - +0.2 5,105,066 + +0.2 5,105,067 - -0.1
Or see this region's nucleotide sequence